Basic information

• Dataset:  Human (Full-length cDNA) Human (mRNA) Mouse (Full-length cDNA) Mouse (mRNA) Rat (RNA) Chimpanzee (RNA) Macaque (RNA) Dog (RNA)
• Locus/transcript information:  Keyword H-Inv CluSter (HIX) H-Inv Transcript (HIT) ACC/RefSeq/ENST ID HUGO gene symbol Entrez Gene ID OMIM ID EC NO Definition

Genomic structure

• Chromosome number:  All
• Strand:  + - both
• Genomic position:  from to bp
• Splice-site sequences:  All GT - AG GC - AG AT - AC not GT - AG NAGNAG
• Retrotransposon:  LTR LINE SINE SINE (Alu only)

AS genomic structure

• Number of RASV:  from to
• AS location:  5'-end  Internal  3'-end 
• AS pattern: 
  Cassette exon  (including multiple cassette)
  Alternative 3' splice 
  Alternative 5' splice 
  Mutually exclusive exon 
  Retained intron 
  Alternative first exon 5'-end
  Alternative last exon 3'-end
  

Protein annotation

• ORF length:  from to aa
• Protein motif:  InterPro ID Definition
• GO:  GO ID Definition
• Subcellular localization signal: 
  WoLF PSORT All chlo: chloroplast cyto: cytosol cysk: cytoskeleton E.R.: endoplasmic reticulum extr: extracellular golg: golgi apparatus lyso: lysosome mito: mitochondria nucl: nuclear pero: peroxisome plas: plasma membrane vacu: vacuolar membrane TargetP All C: Chloroplast M: Mitochondrion S: Secretory pathway _: Any other location
• Transmembrane domain:  TMHMM SOSUI
• Aberrant ORF:  NMD (PTC)

AS protein annotation

• Difference in length of encoded protein:  from to aa
• AS region:  5'UTR CDS 3'UTR
• AS affecting protein function: 
  Protein motif GO Subcellular localization signal Transmembrane domain
• Complex AS pattern:  Bridged Nested Multiple CDS

AS comparative genomics analysis

• Compared species: 
• Conservation of RASV: 
  Non-conserved Genome-conserved Transcript-conserved
  Equally-spliced variant (ESV) Conserved AS