Human (Full-length cDNA)
Human (mRNA)
Mouse (Full-length cDNA)
Mouse (mRNA)
Rat (RNA)
Chimpanzee (RNA)
Macaque (RNA)
Dog (RNA)
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Mechanism of AS
Materials and methods
Statistics
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Related databases
AceView
: NCBI's alternative splicing database
http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/
DBTSS
: DataBase of Transcriptional Start Sites
http://dbtss.hgc.jp/
H-InvDB
: Annotated Human Gene Database
http://h-invitational.jp/
Satellite databases of H-InvDB
Evola
: Evolutionary annotation database
http://h-invitational.jp/evola/
G-compass
: Web tool for comparative genomics
http://h-invitational.jp/g-compass/
H-ANGEL
: Human Anatomical Gene Expression Library
http://h-invitational.jp/h-angel/
HEAT
: H-InvDB Enrichment Analysis Tool
http://hinv.jp/HEAT/
Hyperlink Management Sytem
: Tool for hyperlinks among databases
http://biodb.jp/
LEGENDA
: Literature-Extracted GENe-Disease Associations
http://h-invitational.jp/legenda/
PANDA
: Priority Analysis for Disease Association
http://www.h-invitational.jp/panda/app
TACT
: Transcriptome Auto-annotation Conducting Tool
http://h-invitational.jp/tact/
VarySysDB
: Human genetic polymorphism database
http://h-invitational.jp/varygene/
Programs used for analysis
BLASTZ
: Sequence alignment program for whole-genome alignment
http://www.psc.edu/general/software/packages/blastz/
.
Bowtie
: An ultrafast memory-efficient short read aligner
http://bowtie-bio.sourceforge.net/index.shtml
FAS-ESS
: Prediction program of ESS
http://genes.mit.edu/fas-ess/
.
InterProScan
: Protein motif sequence search program to InterPro database
http://www.ebi.ac.uk/Tools/pfa/iprscan/
.
RepeatMasker
: Detection program of repeat elements like retrotransposon
http://www.repeatmasker.org/
.
RESCUE-ESE
: Prediction program of ESE
http://genes.mit.edu/burgelab/rescue-ese/
.
SOSUI
: Prediction program of transmembrane domain
http://bp.nuap.nagoya-u.ac.jp/sosui/
.
TargetP
: Prediction program of subcellular localization signal
http://www.cbs.dtu.dk/services/TargetP/
.
TMHMM
: Prediction programe of transmembrane domain
http://www.cbs.dtu.dk/services/TMHMM/
.
TopHat
: A spliced read mapper for RNA-Seq
http://tophat.cbcb.umd.edu/
WoLF PSORT (WPSORT)
: Prediction program of subcellular localization signal
http://wolfpsort.seq.cbrc.jp/aboutWoLF_PSORT.html.en
.