Links
Related databases
- AceView: NCBI's alternative splicing database http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/
- DBTSS: DataBase of Transcriptional Start Sites http://dbtss.hgc.jp/
- H-InvDB: Annotated Human Gene Database http://h-invitational.jp/
Satellite databases of H-InvDB
- Evola: Evolutionary annotation database http://h-invitational.jp/evola/
- G-compass: Web tool for comparative genomics http://h-invitational.jp/g-compass/
- H-ANGEL: Human Anatomical Gene Expression Library http://h-invitational.jp/h-angel/
- HEAT: H-InvDB Enrichment Analysis Tool http://hinv.jp/HEAT/
- Hyperlink Management Sytem: Tool for hyperlinks among databases http://biodb.jp/
- LEGENDA: Literature-Extracted GENe-Disease Associations http://h-invitational.jp/legenda/
- PANDA: Priority Analysis for Disease Association http://www.h-invitational.jp/panda/app
- TACT: Transcriptome Auto-annotation Conducting Tool http://h-invitational.jp/tact/
- VarySysDB: Human genetic polymorphism database http://h-invitational.jp/varygene/
Programs used for analysis
- BLASTZ: Sequence alignment program for whole-genome alignment http://www.psc.edu/general/software/packages/blastz/.
- Bowtie: An ultrafast memory-efficient short read aligner http://bowtie-bio.sourceforge.net/index.shtml
- FAS-ESS: Prediction program of ESS http://genes.mit.edu/fas-ess/.
- InterProScan: Protein motif sequence search program to InterPro database http://www.ebi.ac.uk/InterProScan/.
- RepeatMasker: Detection program of repeat elements like retrotransposon http://www.repeatmasker.org/.
- RESCUE-ESE: Prediction program of ESE http://genes.mit.edu/burgelab/rescue-ese/.
- SOSUI: Prediction program of transmembrane domain http://bp.nuap.nagoya-u.ac.jp/sosui/.
- TargetP: Prediction program of subcellular localization signal http://www.cbs.dtu.dk/services/TargetP/.
- TMHMM: Prediction programe of transmembrane domain http://www.cbs.dtu.dk/services/TMHMM/.
- TopHat: A spliced read mapper for RNA-Seq http://tophat.cbcb.umd.edu/
- WoLF PSORT (WPSORT): Prediction program of subcellular localization signal http://wolfpsort.seq.cbrc.jp/aboutWoLF_PSORT.html.en.