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AS locus structure map

02-0000198:
Chromosome: 2 Position: 39166379..39329973 (163.6Kbp) Strand: + Number of RASVs: 16
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
02-0000198 HIX0005252

RASV
ID Cell type Tissue type Development stage Sex Definition
XM_535217 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 2 (LOC478038), mRNA.
XM_852810 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 4 (LOC478038), mRNA.
ENSCAFT00000009846
ENSCAFT00000009858
ENSCAFT00000009862
ENSCAFT00000009865
ENSCAFT00000009870
ENSCAFT00000009877
ENSCAFT00000009880
XM_844289 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 2 isoform 1 precursor (LOC487181), mRNA.
XM_844300 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 3 isoform 1 precursor (LOC607565), mRNA.
XM_844345 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 4 isoform 1 precursor (LOC607598), mRNA.
XM_844362 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 8 isoform 1 precursor (LOC607612), mRNA.
XM_844381 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 5 isoform 1 precursor (LOC607624), mRNA.
XM_844460 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 11 isoform 2 precursor (LOC487185), mRNA.
XM_852734 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 3 (LOC478038), mRNA.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
ENSCAFT00000009881
ENSCAFT00000036512

RefSeq
ID Definition
XM_535217 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 2 (LOC478038), mRNA.
XM_544312 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 10 isoform 2 precursor (LOC487184), mRNA.
XM_844221 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 2 isoform 2 precursor (LOC607521), mRNA.
XM_844256 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 1 isoform 2 precursor (LOC607540), mRNA.
XM_844273 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 4 isoform 2 precursor (LOC607550), mRNA.
XM_844319 PREDICTED: Canis familiaris similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 (LOC607581), mRNA.
XM_844333 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 7 isoform 2 precursor (LOC487182), mRNA.
XM_844419 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 6 isoform 1 precursor (LOC487183), mRNA.
XM_844448 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 7 isoform 2 precursor (LOC607682), mRNA.
XM_852810 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 4 (LOC478038), mRNA.
XM_844289 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 2 isoform 1 precursor (LOC487181), mRNA.
XM_844300 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 3 isoform 1 precursor (LOC607565), mRNA.
XM_844345 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 4 isoform 1 precursor (LOC607598), mRNA.
XM_844362 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 8 isoform 1 precursor (LOC607612), mRNA.
XM_844381 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 5 isoform 1 precursor (LOC607624), mRNA.
XM_844460 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 11 isoform 2 precursor (LOC487185), mRNA.
XM_852734 PREDICTED: Canis familiaris similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 3 (LOC478038), mRNA.

Ensembl
ID Definition
ENSCAFT00000009881
ENSCAFT00000036512
ENSCAFT00000009846
ENSCAFT00000009858
ENSCAFT00000009862
ENSCAFT00000009865
ENSCAFT00000009870
ENSCAFT00000009877
ENSCAFT00000009880
 
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