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AS locus structure map

04-0000163: PREDICTED: Canis familiaris similar to prosaposin, transcript variant 3 (LOC479240), mRNA.
Chromosome: 4 Position: 25782194..25814947 (32.8Kbp) Strand: - Number of RASVs: 8
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
04-0000163 HIX0008908

RASV
ID Cell type Tissue type Development stage Sex Definition
XM_856348 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 3 (LOC479240), mRNA.
ENSCAFT00000022867
ENSCAFT00000022871
XM_536382 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 1 (LOC479240), mRNA.
XM_845373 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 2 (LOC479240), mRNA.
XM_856376 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 4 (LOC479240), mRNA.
XM_856438 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 5 (LOC479240), mRNA.
XM_856497 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 6 (LOC479240), mRNA.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
ENSCAFT00000022878

RefSeq
ID Definition
XM_856348 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 3 (LOC479240), mRNA.
XM_536382 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 1 (LOC479240), mRNA.
XM_845373 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 2 (LOC479240), mRNA.
XM_856376 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 4 (LOC479240), mRNA.
XM_856438 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 5 (LOC479240), mRNA.
XM_856497 PREDICTED: Canis familiaris similar to prosaposin, transcript variant 6 (LOC479240), mRNA.

Ensembl
ID Definition
ENSCAFT00000022878
ENSCAFT00000022867
ENSCAFT00000022871
 
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