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AS locus structure map

05-0000359:
Chromosome: 5 Position: 35469356..35480550 (11.2Kbp) Strand: + Number of RASVs: 6
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
05-0000359 HIX0202492
05-0000359 HIX0013500

RASV
ID Cell type Tissue type Development stage Sex Definition
ENSCAFT00000026330
XM_854415 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 3 (LOC479484), mRNA.
ENSCAFT00000026329
ENSCAFT00000036876
XM_536622 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 1 (LOC479484), mRNA.
XM_854479 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 4 (LOC479484), mRNA.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
XM_844607 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 2 (LOC479484), mRNA.
ENSCAFT00000036872

RefSeq
ID Definition
XM_844607 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 2 (LOC479484), mRNA.
XM_854415 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 3 (LOC479484), mRNA.
XM_536622 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 1 (LOC479484), mRNA.
XM_854479 PREDICTED: Canis familiaris similar to tumor necrosis factor (ligand) superfamily, member 12-member 13, transcript variant 4 (LOC479484), mRNA.

Ensembl
ID Definition
ENSCAFT00000026330
ENSCAFT00000036872
ENSCAFT00000026329
ENSCAFT00000036876
 
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