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AS locus structure map

HIX0000180: Protein-arginine deiminase type-2 (EC 3.5.3.15) (Protein-arginine deiminase type II) (Peptidylarginine deiminase II) (PAD-H19).
Chromosome: 1 Position: 17393256..17445948 (52.7Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0000180 04-0000898 (mouse_mrna)
HIX0000180 01-0000702 (macaque_rna)
HIX0000180 02-0000579 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000000711 PADI2 607935 brain adult male Protein-arginine deiminase type-2 (EC 3.5.3.15) (Protein-arginine deiminase type II) (Peptidylarginine deiminase II) (PAD-H19).
HIT000034515 PADI2 607935 Pancreas, epithelioid carcinoma Similar to Protein-arginine deiminase type-2 (EC 3.5.3.15) (Protein-arginine deiminase type II) (Peptidylarginine deiminase II) (PAD-H19).
HIT000046879 PADI2 607935 brain Similar to Protein-arginine deiminase type-2 (EC 3.5.3.15) (Protein-arginine deiminase type II) (Peptidylarginine deiminase II) (PAD-H19).
HIT000490407 PADI2 607935 hippocampus Similar to Protein-arginine deiminase type-2 (EC 3.5.3.15) (Protein-arginine deiminase type II) (Peptidylarginine deiminase II) (PAD-H19).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000058986 PADI2 607935 HSC-1 Protein-arginine deiminase type-2 (EC 3.5.3.15) (Protein-arginine deiminase type II) (Peptidylarginine deiminase II) (PAD-H19).

RefSeq
ID Definition
NM_007365 Homo sapiens peptidyl arginine deiminase, type II (PADI2), mRNA.

Ensembl
ID Definition
ENST00000375486 Protein-arginine deiminase type-2 (EC 3.5.3.15)(Protein-arginine deiminase type II)(Peptidylarginine deiminase II)(PAD-H19) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y2J8]
ENST00000375481 Protein-arginine deiminase type-2 (EC 3.5.3.15)(Protein-arginine deiminase type II)(Peptidylarginine deiminase II)(PAD-H19) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y2J8]
ENST00000444885 Protein-arginine deiminase type-2 (EC 3.5.3.15)(Protein-arginine deiminase type II)(Peptidylarginine deiminase II)(PAD-H19) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y2J8]
 
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