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AS locus structure map

HIX0001253: Cyclic AMP-dependent transcription factor ATF-6 alpha (Activating transcription factor 6 alpha) (ATF6-alpha) [Contains: Processed cyclic AMP-dependent transcription factor ATF-6 alpha].
Chromosome: 1 Position: 161736084..161932961 (196.9Kbp) Strand: + Number of RASVs: 2
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0001253 01-0001153 (chimpanzee_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000423295 ATF6 605537 brain fetal Cyclic AMP-dependent transcription factor ATF-6 alpha (Activating transcription factor 6 alpha) (ATF6-alpha) [Contains: Processed cyclic AMP-dependent transcription factor ATF-6 alpha].
HIT000328864 ATF6 605537 brain Similar to Cyclic AMP-dependent transcription factor ATF-6 alpha (Activating transcription factor 6 alpha) (ATF6-alpha) [Contains: Processed cyclic AMP-dependent transcription factor ATF-6 alpha].

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000058452 ATF6 605537 Cyclic AMP-dependent transcription factor ATF-6 alpha (Activating transcription factor 6 alpha) (ATF6-alpha) [Contains: Processed cyclic AMP-dependent transcription factor ATF-6 alpha].
HIT000061805 ATF6 605537 Cyclic AMP-dependent transcription factor ATF-6 alpha (Activating transcription factor 6 alpha) (ATF6-alpha) [Contains: Processed cyclic AMP-dependent transcription factor ATF-6 alpha].

RefSeq
ID Definition
NM_007348 Homo sapiens activating transcription factor 6 (ATF6), mRNA.

Ensembl
ID Definition
ENST00000367942 Cyclic AMP-dependent transcription factor ATF-6 alpha (cAMP-dependent transcription factor ATF-6 alpha)(Activating transcription factor 6 alpha)(ATF6- alpha) [Contains Processed cyclic AMP-dependent transcription factor ATF-6 alpha] [Source:UniProtKB/Swiss- Prot;Acc:P18850]
 
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