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AS locus structure map

HIX0001627: Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp).
Chromosome: 1 Position: 224415036..224517884 (102.8Kbp) Strand: - Number of RASVs: 6
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0001627 13-0000382 (rat_rna)
HIX0001627 01-0001479 (chimpanzee_rna)
HIX0001627 01-0001831 (macaque_rna)
HIX0001627 07-0000308 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000221041 NVL 602426 kidney Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp).
HIT000035662 NVL 602426 Eye, retinoblastoma Similar to Nuclear VCP-like isoform 2.
HIT000221447 NVL 602426 kidney Nuclear VCP-like isoform 2.
HIT000488547 NVL 602426 cerebellum Similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp).
HIT000492020 NVL 602426 brain fetal Similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp).
HIT000492868 NVL 602426 leukemia cell line (myelogenous) Similar to Nuclear VCP-like isoform 2.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000491694 NVL 602426 cord blood Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp).

RefSeq
ID Definition
NM_002533 Homo sapiens nuclear VCP-like (NVL), transcript variant 1, mRNA.
NM_206840 Homo sapiens nuclear VCP-like (NVL), transcript variant 2, mRNA.

Ensembl
ID Definition
ENST00000281701 Nuclear valosin-containing protein-like (Nuclear VCP-like protein)(NVLp) [Source:UniProtKB/Swiss- Prot;Acc:O15381]
ENST00000361463 Nuclear valosin-containing protein-like (Nuclear VCP-like protein)(NVLp) [Source:UniProtKB/Swiss- Prot;Acc:O15381]
ENST00000340871 Nuclear valosin-containing protein-like (Nuclear VCP-like protein)(NVLp) [Source:UniProtKB/Swiss- Prot;Acc:O15381]
ENST00000391875 Nuclear valosin-containing protein-like (Nuclear VCP-like protein)(NVLp) [Source:UniProtKB/Swiss- Prot;Acc:O15381]
ENST00000436927 Nuclear valosin-containing protein-like (Nuclear VCP-like protein)(NVLp) [Source:UniProtKB/Swiss- Prot;Acc:O15381]
ENST00000445660 Nuclear valosin-containing protein-like (Nuclear VCP-like protein)(NVLp) [Source:UniProtKB/Swiss- Prot;Acc:O15381]
 
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