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AS locus structure map

HIX0002151: Similar to Matrin-3 (Nuclear scaffold protein p130/MAT3).
Chromosome: 2 Position: 71503723..71662191 (158.5Kbp) Strand: + Number of RASVs: 9
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0002151 06-0000964 (mouse_mrna)
HIX0002151 04-0001315 (rat_rna)
HIX0002151 02a-0000327 (chimpanzee_rna)
HIX0002151 13-0000138 (macaque_rna)
HIX0002151 17-0000342 (dog_rna)
HIX0002151 17-0000343 (dog_rna) low priority

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000054240 ZNF638 human cervix adult Similar to Matrin-3 (Nuclear scaffold protein p130/MAT3).
HIT000488562 ZNF638 cerebellum Similar to Matrin3.
HIT000018445 ZNF638 thymus Zinc finger, U1-type domain containing protein.
HIT000039715 ZNF638 Testis Similar to Matrin3.
HIT000048579 ZNF638 uterus Conserved hypothetical protein.
HIT000075861 ZNF638 testis Conserved hypothetical protein.
HIT000101785 ZNF638 Similar to Matrin-3 (Nuclear scaffold protein p130/MAT3).
HIT000266043 ZNF638 Skin, melanotic melanoma. Similar to Matrin-3 (Nuclear scaffold protein p130/MAT3).
HIT000306361 ZNF638 testis adult Similar to Matrin-3 (Nuclear scaffold protein p130/MAT3).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000502171 ZNF638 Cerebellum, Lung, PCR rescued clones Similar to Matrin-3 (Nuclear scaffold protein p130/MAT3).
HIT000428087 ZNF638 thalamus Similar to Matrin3.

RefSeq
ID Definition
NM_014497 Homo sapiens zinc finger protein 638 (ZNF638), transcript variant 1, mRNA.
NM_001014972 Homo sapiens zinc finger protein 638 (ZNF638), transcript variant 2, mRNA.

Ensembl
ID Definition
ENST00000264447 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000355812 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000377802 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000394137 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000409407 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000409544 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000410075 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000411930 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000417778 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000454122 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000454278 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
ENST00000455226 Zinc finger protein 638 (Zinc finger matrin-like protein)(Nuclear protein 220)(Cutaneous T-cell lymphoma- associated antigen se33-1)(CTCL tumor antigen se33-1) [Source:UniProtKB/Swiss-Prot;Acc:Q14966]
 
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