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AS locus structure map

HIX0003928: Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
Chromosome: 3 Position: 185632356..185655924 (23.6Kbp) Strand: - Number of RASVs: 8
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0003928 16-0000601 (mouse_mrna)
HIX0003928 11-0000106 (rat_rna)
HIX0003928 03-0000826 (chimpanzee_rna)
HIX0003928 02-0000199 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000045483 TRA2B 602719 spleen Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000269453 TRA2B 602719 HeLa cells Cot 25-normalized Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000023021 TRA2B 602719 uterus, tumor tissue Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000282307 TRA2B 602719 Placenta Cot 25-normalized Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000306255 TRA2B 602719 fetal kidney fetal Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000329143 TRA2B 602719 brain Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000427133 TRA2B 602719 testis Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000495742 TRA2B 602719 spleen Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000019350 TRA2B 602719 cerebellum Similar to Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000029395 TRA2B 602719 Placenta, choriocarcinoma Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000029636 TRA2B 602719 Lung, small cell carcinoma Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000032507 TRA2B 602719 Skin, melanotic melanoma, high MDR. Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000220685 TRA2B 602719 Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000221036 TRA2B 602719 brain 73 day post natal infant female Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000288145 TRA2B 602719 Neuroblastoma Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).
HIT000434498 TRA2B 602719 synovial membrane tissue from rheumatoid Splicing factor, arginine/serine-rich 10 (Transformer-2-beta) (HTRA2- beta) (Transformer 2 protein homolog).

RefSeq
ID Definition
NM_004593 Homo sapiens transformer 2 beta homolog (Drosophila) (TRA2B), mRNA.

Ensembl
ID Definition
ENST00000453386 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000259043 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000342294 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000382191 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000392502 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000414862 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000448735 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
ENST00000456380 Transformer-2 protein homolog beta (HTRA2- beta)(Transformer-2 protein homolog B)(Splicing factor, arginine/serine-rich 10) [Source:UniProtKB/Swiss- Prot;Acc:P62995]
 
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