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AS locus structure map

HIX0005115: Similar to Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).
Chromosome: 5 Position: 118604418..118730294 (125.9Kbp) Strand: + Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0005115 18-0000337 (mouse_mrna) low priority
HIX0005115 18-0000533 (mouse_mrna)
HIX0005115 05-0000360 (chimpanzee_rna)
HIX0005115 11-0000025 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000068600 TNFAIP8 612111 adherent monocytes treated with GM-CSF and Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).
HIT000004405 TNFAIP8 612111 placenta Tumor necrosis factor, alpha-induced protein 8 isoform b.
HIT000022738 TNFAIP8 612111 thymus Similar to Tumor necrosis factor, alpha-induced protein 8 isoform b.
HIT000495905 TNFAIP8 612111 stomach Similar to Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000004324 TNFAIP8 612111 placenta Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).
HIT000032401 TNFAIP8 612111 Bladder, carcinoma Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).
HIT000032987 TNFAIP8 612111 Brain, primitive neuroectodermal Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).
HIT000022139 TNFAIP8 612111 spleen Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein) (TNF-induced protein GG2-1) (SCC-S2) (NF-kappa-B-inducible DED-containing protein) (NDED) (MDC-3.13).
HIT000065820 TNFAIP8 612111 endothelial umbilical vein Tumor necrosis factor, alpha-induced protein 8 isoform b.

RefSeq
ID Definition
NM_014350 Homo sapiens tumor necrosis factor, alpha-induced protein 8 (TNFAIP8), transcript variant 1, mRNA.
NM_001077654 Homo sapiens tumor necrosis factor, alpha-induced protein 8 (TNFAIP8), transcript variant 2, mRNA.

Ensembl
ID Definition
ENST00000415806 Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein)(TNF- induced protein GG2-1)(SCC-S2)(NF-kappa-B-inducible DED- containing protein)(NDED)(MDC-3.13) [Source:UniProtKB/Swiss-Prot;Acc:O95379]
ENST00000274456 Tumor necrosis factor, alpha-induced protein 8 (Head and neck tumor and metastasis-related protein)(TNF- induced protein GG2-1)(SCC-S2)(NF-kappa-B-inducible DED- containing protein)(NDED)(MDC-3.13) [Source:UniProtKB/Swiss-Prot;Acc:O95379]
 
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