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AS locus structure map

HIX0005159: Interferon regulatory factor 1 (IRF-1).
Chromosome: 5 Position: 131776132..131826469 (50.3Kbp) Strand: - Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0005159 11-0001469 (mouse_mrna)
HIX0005159 10-0000347 (rat_rna)
HIX0005159 05-0000397 (chimpanzee_rna)
HIX0005159 05-0000756 (chimpanzee_rna) low priority
HIX0005159 06-0000244 (macaque_rna)
HIX0005159 06-0000903 (macaque_rna) low priority

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000321426 IRF1 211980 Interferon regulatory factor 1 (IRF-1).
HIT000329559 IRF1 211980 spleen Similar to Interferon regulatory factor 1 (Fragment).
HIT000493394 IRF1 211980 teratocarcinoma Similar to Interferon regulatory factor 1 (IRF-1).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000034397 IRF1 211980 Pancreas, adenocarcinoma Interferon regulatory factor 1 (IRF-1).
HIT000274032 IRF1 211980 B cells (Ramos cell line) Cot 25-normalized Interferon regulatory factor 1 (IRF-1).
HIT000432891 IRF1 211980 dermal papilla cells (HDPC) Interferon regulatory factor 1 (IRF-1).

RefSeq
ID Definition
NM_002198 Homo sapiens interferon regulatory factor 1 (IRF1), mRNA.

Ensembl
ID Definition
ENST00000245414 Interferon regulatory factor 1 (IRF-1) [Source:UniProtKB/Swiss-Prot;Acc:P10914]
ENST00000405885 Interferon regulatory factor 1 (IRF-1) [Source:UniProtKB/Swiss-Prot;Acc:P10914]
ENST00000421011 Interferon regulatory factor 1 (IRF-1) [Source:UniProtKB/Swiss-Prot;Acc:P10914]
ENST00000437654 Interferon regulatory factor 1 (IRF-1) [Source:UniProtKB/Swiss-Prot;Acc:P10914]
ENST00000439555 Interferon regulatory factor 1 (IRF-1) [Source:UniProtKB/Swiss-Prot;Acc:P10914]
ENST00000458069 Interferon regulatory factor 1 (IRF-1) [Source:UniProtKB/Swiss-Prot;Acc:P10914]
 
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