You need a JavaScript-enabled browser.

Please return to the top page after you change the setting of JavaScript.

AS locus structure map

HIX0006117: Phox-like domain containing protein.
Chromosome: 6 Position: 108505502..108582464 (77.0Kbp) Strand: - Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0006117 06-0000635 (chimpanzee_rna)
HIX0006117 04-0000197 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000285321 605930 Placenta Cot 25-normalized Sorting nexin-3 (Protein SDP3).
HIT000037730 605930 Colon, adenocarcinoma Phox-like domain containing protein.
HIT000059477 605930 Phox-like domain containing protein.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000033796 605930 Brain, glioblastoma Sorting nexin-3 (Protein SDP3).
HIT000036789 605930 Skin, melanotic melanoma, high MDR. Sorting nexin-3 (Protein SDP3).
HIT000037037 605930 Pancreas, epithelioid carcinoma Sorting nexin-3 (Protein SDP3).
HIT000063146 SNX3 605930 Sorting nexin-3 (Protein SDP3).
HIT000100034 605930 Sorting nexin-3 (Protein SDP3).
HIT000267748 605930 Sorting nexin-3 (Protein SDP3).
HIT000274623 605930 Neuroblastoma Cot 25-normalized Sorting nexin-3 (Protein SDP3).
HIT000281026 605930 B cells (Ramos cell line) Cot 25-normalized Sorting nexin-3 (Protein SDP3).
HIT000065247 605930 Sorting nexin-3 (Protein SDP3).
HIT000422273 605930 cerebellum Sorting nexin-3 (Protein SDP3).

RefSeq
ID Definition
NM_003795 Homo sapiens sorting nexin 3 (SNX3), transcript variant 1, mRNA.
NM_152827 Homo sapiens sorting nexin 3 (SNX3), transcript variant 2, mRNA.

Ensembl
ID Definition
ENST00000230085 Sorting nexin-3 (Protein SDP3) [Source:UniProtKB/Swiss-Prot;Acc:O60493]
ENST00000349379 Sorting nexin-3 (Protein SDP3) [Source:UniProtKB/Swiss-Prot;Acc:O60493]
ENST00000368979 Sorting nexin-3 (Protein SDP3) [Source:UniProtKB/Swiss-Prot;Acc:O60493]
ENST00000368982 Sorting nexin-3 (Protein SDP3) [Source:UniProtKB/Swiss-Prot;Acc:O60493]
ENST00000426155 Sorting nexin-3 (Protein SDP3) [Source:UniProtKB/Swiss-Prot;Acc:O60493]
 
Annotation controller