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AS locus structure map

HIX0008547: SEC16 homolog A.
Chromosome: 9 Position: 139334548..139377507 (43.0Kbp) Strand: - Number of RASVs: 6
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0008547 02-0001256 (mouse_mrna)
HIX0008547 03-0001558 (rat_rna)
HIX0008547 09-0000575 (chimpanzee_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000000016 SEC16A 612854 normal human aortic endothelial cells SEC16 homolog A.
HIT000019611 SEC16A 612854 brain Similar to SEC16 homolog A.
HIT000044716 SEC16A 612854 hippocampus Similar to SEC16 homolog A.
HIT000046088 SEC16A 612854 thymus Similar to SEC16 homolog A.
HIT000086004 SEC16A 612854 Placenta, choriocarcinoma Similar to SEC16 homolog A.
HIT000336008 SEC16A 612854 Lung, epidermoid carcinoma Similar to SEC16 homolog A.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition

RefSeq
ID Definition
NM_014866 Homo sapiens SEC16 homolog A (S. cerevisiae) (SEC16A), mRNA.

Ensembl
ID Definition
ENST00000277537 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000290037 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000313050 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000313084 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000371706 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000398348 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000404925 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000431893 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000433860 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
ENST00000453963 Protein transport protein Sec16A (Protein SEC16 homolog A) [Source:UniProtKB/Swiss-Prot;Acc:O15027]
 
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