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AS locus structure map

HIX0008725: Similar to ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-) (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin- associated metalloprotease) (PAMP).
Chromosome: 10 Position: 27399384..27444195 (44.8Kbp) Strand: - Number of RASVs: 6
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0008725 02-0000252 (mouse_mrna)
HIX0008725 10-0000112 (chimpanzee_rna)
HIX0008725 09-0000034 (macaque_rna) low priority
HIX0008725 09-0000061 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000006204 YME1L1 607472 teratocarcinoma Similar to ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-) (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin- associated metalloprotease) (PAMP).
HIT000039732 YME1L1 607472 Muscle, rhabdomyosarcoma YME1-like 1 isoform 3.
HIT000033452 YME1L1 607472 Muscle, rhabdomyosarcoma Similar to ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-) (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin- associated metalloprotease) (PAMP).
HIT000071609 YME1L1 607472 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-) (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin- associated metalloprotease) (PAMP).
HIT000290225 YME1L1 607472 T cells (Jurkat cell line) Cot 10-normalized Similar to YME1-like 1 isoform 3.
HIT000492597 YME1L1 607472 dermal papilla cells (HDPC) Similar to FtsH homolog.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000089927 YME1L1 607472 Eye, retinoblastoma Similar to ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-) (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin- associated metalloprotease) (PAMP).
HIT000050800 YME1L1 607472 Placenta, choriocarcinoma YME1-like 1 isoform 3.
HIT000244715 YME1L1 607472 YME1-like 1 isoform 3.
HIT000252528 YME1L1 607472 YME1-like 1 isoform 3.
HIT000433238 YME1L1 607472 normal mesangial cells (NHMC56046-2) YME1-like 1 isoform 3.
HIT000424089 YME1L1 607472 tongue YME1-like 1 isoform 3.

RefSeq
ID Definition
NM_014263 Homo sapiens YME1-like 1 (S. cerevisiae) (YME1L1), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA.
NM_139312 Homo sapiens YME1-like 1 (S. cerevisiae) (YME1L1), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.

Ensembl
ID Definition
ENST00000326799 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.- )(YME1-like protein 1)(ATP-dependent metalloprotease FtsH1)(Meg-4)(Presenilin-associated metalloprotease)(PAMP) [Source:UniProtKB/Swiss-Prot;Acc:Q96TA2]
ENST00000376016 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.- )(YME1-like protein 1)(ATP-dependent metalloprotease FtsH1)(Meg-4)(Presenilin-associated metalloprotease)(PAMP) [Source:UniProtKB/Swiss-Prot;Acc:Q96TA2]
ENST00000375969 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.- )(YME1-like protein 1)(ATP-dependent metalloprotease FtsH1)(Meg-4)(Presenilin-associated metalloprotease)(PAMP) [Source:UniProtKB/Swiss-Prot;Acc:Q96TA2]
ENST00000375972 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.- )(YME1-like protein 1)(ATP-dependent metalloprotease FtsH1)(Meg-4)(Presenilin-associated metalloprotease)(PAMP) [Source:UniProtKB/Swiss-Prot;Acc:Q96TA2]
ENST00000396296 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.- )(YME1-like protein 1)(ATP-dependent metalloprotease FtsH1)(Meg-4)(Presenilin-associated metalloprotease)(PAMP) [Source:UniProtKB/Swiss-Prot;Acc:Q96TA2]
ENST00000427324 ATP-dependent metalloprotease YME1L1 (EC 3.4.24.- )(YME1-like protein 1)(ATP-dependent metalloprotease FtsH1)(Meg-4)(Presenilin-associated metalloprotease)(PAMP) [Source:UniProtKB/Swiss-Prot;Acc:Q96TA2]
 
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