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AS locus structure map

HIX0009109: Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
Chromosome: 10 Position: 101156627..101800721 (644.1Kbp) Strand: - Number of RASVs: 7
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0009109 09-0000439 (macaque_rna)
HIX0009109 28-0000111 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000304317 GOT1 138180 Fetal brain Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000334183 GOT1 Breast, adenocarcinoma Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000301041 GOT1 138180 Fetal liver Similar to Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000304305 GOT1 138180 B cells (Ramos cell line) Similar to Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000428040 GOT1 138180 thalamus Similar to Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000488107 GOT1 138180 cerebellum Similar to Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000496540 GOT1 138180 testis Similar to Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000280918 GOT1 138180 Neuroblastoma Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000285856 GOT1 138180 Neuroblastoma Cot 25-normalized Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000298438 GOT1 138180 B cells (Ramos cell line) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000299916 GOT1 138180 HeLa cells Cot 25-normalized Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).
HIT000301515 GOT1 138180 T cells (Jurkat cell line) Cot 10-normalized Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 1).

RefSeq
ID Definition
NM_002079 Homo sapiens glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) (GOT1), mRNA.

Ensembl
ID Definition
ENST00000370508 Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)(Transaminase A)(Glutamate oxaloacetate transaminase 1) [Source:UniProtKB/Swiss-Prot;Acc:P17174]
 
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