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AS locus structure map

HIX0009611: DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
Chromosome: 11 Position: 47236493..47260769 (24.3Kbp) Strand: + Number of RASVs: 7
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0009611 02-0000825 (mouse_mrna)
HIX0009611 02-0001288 (mouse_mrna) low priority
HIX0009611 02-0001466 (mouse_mrna) low priority
HIX0009611 11-0000347 (chimpanzee_rna)
HIX0009611 14-0001105 (macaque_rna)
HIX0009611 18-0000307 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000029339 DDB2 600811 Brain, neuroblastoma DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000303058 DDB2 600811 Placenta Cot 25-normalized Similar to DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000016507 DDB2 600811 brain fetal Similar to DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000242302 DDB2 600811 female Similar to DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000242303 DDB2 600811 female Similar to DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000242304 DDB2 600811 female Similar to Ddb2 protein (Visual cortex cDNA, RIKEN full-length enriched library, clone:K330329L19 product:damage specific DNA binding protein 2, full insert sequence).
HIT000259130 DDB2 600811 Blood, adult leukocytes Similar to DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000100059 DDB2 600811 DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000218449 DDB2 600811 fibroblast epidermal; epithelial DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000277326 DDB2 600811 HeLa cells Cot 25-normalized DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000290552 DDB2 600811 B cells (Ramos cell line) Cot 25-normalized DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000304121 DDB2 600811 HeLa cells Cot 25-normalized DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000432128 DDB2 600811 placenta DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).
HIT000242305 DDB2 600811 female Similar to DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2).

RefSeq
ID Definition
NM_000107 Homo sapiens damage-specific DNA binding protein 2, 48kDa (DDB2), mRNA.

Ensembl
ID Definition
ENST00000256996 DNA damage-binding protein 2 (Damage-specific DNA- binding protein 2)(DDB p48 subunit)(DDBb)(UV-damaged DNA- binding protein 2)(UV-DDB 2) [Source:UniProtKB/Swiss- Prot;Acc:Q92466]
ENST00000378600 DNA damage-binding protein 2 (Damage-specific DNA- binding protein 2)(DDB p48 subunit)(DDBb)(UV-damaged DNA- binding protein 2)(UV-DDB 2) [Source:UniProtKB/Swiss- Prot;Acc:Q92466]
ENST00000378601 DNA damage-binding protein 2 (Damage-specific DNA- binding protein 2)(DDB p48 subunit)(DDBb)(UV-damaged DNA- binding protein 2)(UV-DDB 2) [Source:UniProtKB/Swiss- Prot;Acc:Q92466]
ENST00000378603 DNA damage-binding protein 2 (Damage-specific DNA- binding protein 2)(DDB p48 subunit)(DDBb)(UV-damaged DNA- binding protein 2)(UV-DDB 2) [Source:UniProtKB/Swiss- Prot;Acc:Q92466]
 
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