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AS locus structure map

HIX0010281: Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108).
Chromosome: 11 Position: 118938491..118952687 (14.2Kbp) Strand: + Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0010281 09-0000422 (mouse_mrna)
HIX0010281 08-0000945 (rat_rna)
HIX0010281 11-0000867 (chimpanzee_rna)
HIX0010281 14-0000158 (macaque_rna)
HIX0010281 05-0000169 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000261969 VPS11 608549 Eye, retinoblastoma Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108).
HIT000497597 VPS11 608549 testis Similar to Vacuolar protein sorting 11.
HIT000013315 VPS11 608549 placenta Similar to Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000076957 VPS11 608549 Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108).
HIT000006553 VPS11 608549 teratocarcinoma Similar to Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108).
HIT000028948 VPS11 608549 brain fetal Similar to Vacuolar protein sorting 11.
HIT000035620 VPS11 608549 Skin, melanotic melanoma. Similar to Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108).
HIT000058911 VPS11 608549 human brain Vacuolar protein sorting 11.
HIT000330938 VPS11 608549 human lung Similar to Vacuolar protein sorting 11 (Yeast homolog) variant (Fragment).

RefSeq
ID Definition
NM_021729 Homo sapiens vacuolar protein sorting 11 homolog (S. cerevisiae) (VPS11), mRNA.

Ensembl
ID Definition
ENST00000300793 Vacuolar protein sorting-associated protein 11 homolog (hVPS11)(RING finger protein 108) [Source:UniProtKB/Swiss-Prot;Acc:Q9H270]
ENST00000443691 Vacuolar protein sorting-associated protein 11 homolog (hVPS11)(RING finger protein 108) [Source:UniProtKB/Swiss-Prot;Acc:Q9H270]
 
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