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AS locus structure map

HIX0011883: Calmodulin (CaM).
Chromosome: 14 Position: 90863373..90874610 (11.2Kbp) Strand: + Number of RASVs: 5
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0011883 12-0000262 (mouse_mrna)
HIX0011883 06-0000055 (rat_rna)
HIX0011883 14-0000539 (chimpanzee_rna)
HIX0011883 07-0000334 (macaque_rna)
HIX0011883 08-0000018 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000305896 CALM2 114180 Placenta Cot 25-normalized Calmodulin (CaM).
HIT000033560 CALM1 114180 Primary B-Cells from Tonsils Similar to Calmodulin (Fragment).
HIT000053157 CALM2 114180 Brain, hippocampus Calmodulin (CaM).
HIT000271576 CALM1 114180 Neuroblastoma Similar to Calmodulin-alpha (CaM A) (Fragment).
HIT000422734 CALM1 114180 hippocampus Similar to Calmodulin (CaM).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000029639 CALM2 114180 Lung, small cell carcinoma Calmodulin (CaM).
HIT000033853 CALM2 114180 Placenta, choriocarcinoma Calmodulin (CaM).
HIT000035481 CALM2 114180 Lung, small cell carcinoma Calmodulin (CaM).
HIT000195117 CALM2 114180 liver adult Calmodulin (CaM).
HIT000269575 CALM2 114180 Placenta Calmodulin (CaM).
HIT000270230 CALM2 114180 Placenta Cot 25-normalized Calmodulin (CaM).
HIT000274940 CALM2 114180 T cells (Jurkat cell line) Cot 10-normalized Calmodulin (CaM).
HIT000283942 CALM2 114180 T cells (Jurkat cell line) Calmodulin (CaM).
HIT000297958 CALM2 114180 Thymus Calmodulin (CaM).
HIT000298623 CALM2 114180 Placenta Cot 25-normalized Calmodulin (CaM).

RefSeq
ID Definition
NM_006888 Homo sapiens calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA.

Ensembl
ID Definition
ENST00000356978 Calmodulin (CaM) [Source:UniProtKB/Swiss- Prot;Acc:P62158]
ENST00000447653 Calmodulin (CaM) [Source:UniProtKB/Swiss- Prot;Acc:P62158]
 
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