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AS locus structure map

HIX0013001: Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
Chromosome: 16 Position: 46693589..46723144 (29.6Kbp) Strand: - Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0013001 16-0000354 (chimpanzee_rna)
HIX0013001 15-0000114 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000004088 VPS35 601501 teratocarcinoma Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000026544 VPS35 601501 testis adult Similar to Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000055860 VPS35 601501 endometrium adult Similar to Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000002205 VPS35 601501 pheochromocytoma Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000030875 VPS35 601501 Brain, neuroblastoma Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000072918 VPS35 601501 Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000073260 VPS35 601501 lung Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000334527 VPS35 601501 Placenta, normal Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000025484 VPS35 601501 testis adult Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000034898 VPS35 601501 Prostate Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000072619 VPS35 601501 carcinoma colon Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000096645 VPS35 601501 Testis Similar to Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3).
HIT000330998 VPS35 601501 stomach mucosa Similar to Vacuolar protein sorting 35 variant (Fragment).

RefSeq
ID Definition
NM_018206 Homo sapiens vacuolar protein sorting 35 homolog (S. cerevisiae) (VPS35), mRNA.

Ensembl
ID Definition
ENST00000299138 Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35)(hVPS35)(Maternal-embryonic 3) [Source:UniProtKB/Swiss-Prot;Acc:Q96QK1]
 
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