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AS locus structure map

HIX0013818: Junction plakoglobin (Desmoplakin-3) (Desmoplakin III) (Catenin gamma).
Chromosome: 17 Position: 39678966..39943183 (264.2Kbp) Strand: - Number of RASVs: 6
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0013818 11-0001506 (mouse_mrna)
HIX0013818 10-0000335 (rat_rna)
HIX0013818 17-0000469 (chimpanzee_rna)
HIX0013818 16-0000706 (macaque_rna)
HIX0013818 09-0000052 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000033342 KRT19 148020 Placenta, choriocarcinoma Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19) (Keratin-19) (K19).
HIT000327559 JUP 611528 adult Junction plakoglobin (Desmoplakin-3) (Desmoplakin III) (Catenin gamma).
HIT000029627 JUP 611528 Lung, small cell carcinoma Similar to Plakoglobin (Fragment).
HIT000035502 JUP 611528 Placenta, choriocarcinoma Similar to Plakoglobin (Fragment).
HIT000291676 JUP 611528 B cells (Ramos cell line) Cot 25-normalized Junction plakoglobin (Desmoplakin-3) (Desmoplakin III) (Catenin gamma).
HIT000488103 cerebellum Similar to Junction plakoglobin (Desmoplakin-3) (Desmoplakin III) (Catenin gamma).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000030975 KRT19 148020 Placenta, choriocarcinoma Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19) (Keratin-19) (K19).
HIT000034924 KRT19 148020 Pancreas, adenocarcinoma Keratin 19.
HIT000262712 KRT19 148020 Placenta, pre-eclamptic Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19) (Keratin-19) (K19).
HIT000266082 KRT19 148020 Breast, adenocarcinoma Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19) (Keratin-19) (K19).
HIT000432127 KRT19 148020 placenta Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19) (Keratin-19) (K19).
HIT000325295 KRT19 148020 placenta(trophoblast) Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19) (Keratin-19) (K19).
HIT000194886 JUP 611528 Adult Junction plakoglobin (Desmoplakin-3) (Desmoplakin III) (Catenin gamma).
HIT000385181 JUP 611528 brain Similar to Plakoglobin (Fragment).

RefSeq
ID Definition
NM_002230 Homo sapiens junction plakoglobin (JUP), transcript variant 1, mRNA.
NM_002276 Homo sapiens keratin 19 (KRT19), mRNA.
NM_021991 Homo sapiens junction plakoglobin (JUP), transcript variant 2, mRNA.

Ensembl
ID Definition
ENST00000310706 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000361566 Keratin, type I cytoskeletal 19 (Cytokeratin- 19)(CK-19)(Keratin-19)(K19) [Source:UniProtKB/Swiss- Prot;Acc:P08727]
ENST00000393930 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000393931 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000420370 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000424457 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000437187 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000437369 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000449889 Junction plakoglobin (Desmoplakin-3)(Desmoplakin III)(Catenin gamma) [Source:UniProtKB/Swiss- Prot;Acc:P14923]
ENST00000455635 Keratin, type I cytoskeletal 19 (Cytokeratin- 19)(CK-19)(Keratin-19)(K19) [Source:UniProtKB/Swiss- Prot;Acc:P08727]
 
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