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AS locus structure map

HIX0014075: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B).
Chromosome: 17 Position: 61909441..61920687 (11.2Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0014075 11-0001711 (mouse_mrna)
HIX0014075 16-0000117 (macaque_rna) low priority
HIX0014075 09-0000264 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000435457 SMARCD2 601736 Clones donated by RIKEN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d2 isoform 1.
HIT000220958 SMARCD2 601736 Jurkat T cells SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B).
HIT000498575 SMARCD2 601736 trachea Similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d2 isoform 2.
HIT000500349 SMARCD2 601736 Testicle, PCR rescued clones Similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000495563 SMARCD2 601736 small intestine SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d2 isoform 1.

RefSeq
ID Definition
NM_003077 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (SMARCD2), transcript variant 2, mRNA.
NM_001098426 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (SMARCD2), transcript variant 1, mRNA.

Ensembl
ID Definition
ENST00000448276 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG- 1/Brm-associated factor subunit B)(BRG1-associated factor 60B) [Source:UniProtKB/Swiss-Prot;Acc:Q92925]
ENST00000450364 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG- 1/Brm-associated factor subunit B)(BRG1-associated factor 60B) [Source:UniProtKB/Swiss-Prot;Acc:Q92925]
ENST00000225742 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG- 1/Brm-associated factor subunit B)(BRG1-associated factor 60B) [Source:UniProtKB/Swiss-Prot;Acc:Q92925]
ENST00000228253 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG- 1/Brm-associated factor subunit B)(BRG1-associated factor 60B) [Source:UniProtKB/Swiss-Prot;Acc:Q92925]
ENST00000323347 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG- 1/Brm-associated factor subunit B)(BRG1-associated factor 60B) [Source:UniProtKB/Swiss-Prot;Acc:Q92925]
 
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