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AS locus structure map

HIX0015219: Similar to Cleft lip and palate transmembrane protein 1.
Chromosome: 19 Position: 45457842..45496599 (38.8Kbp) Strand: + Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0015219 07-0001689 (mouse_mrna)
HIX0015219 19-0000739 (chimpanzee_rna)
HIX0015219 01-0000728 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000032043 CLPTM1 604783 Placenta, choriocarcinoma Similar to Cleft lip and palate transmembrane protein 1.
HIT000082297 CLPTM1 604783 thyroid gland Conserved hypothetical protein.
HIT000499707 CLPTM1 604783 thalamus Similar to Cleft lip and palate transmembrane protein 1.
HIT000429692 CLPTM1 604783 trachea Similar to Cleft lip and palate transmembrane protein 1.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000100182 CLPTM1 604783 Similar to Cleft lip and palate transmembrane protein 1.
HIT000035779 CLPTM1 604783 Skin, melanoma, amelanotic Cleft lip and palate transmembrane 1 family protein.
HIT000063367 CLPTM1 604783 craniofacial Cleft lip and palate transmembrane 1 family protein.
HIT000081970 CLPTM1 604783 teratocarcinoma Cleft lip and palate transmembrane 1 family protein.
HIT000293681 CLPTM1 604783 Adult brain Cleft lip and palate transmembrane 1 family protein.
HIT000331333 CLPTM1 604783 kidney Cleft lip and palate transmembrane 1 family protein.
HIT000487938 CLPTM1 604783 normal astrocytes (NHA5732) Similar to Cleft lip and palate transmembrane protein 1.
HIT000499104 CLPTM1 604783 uterus, tumor tissue Similar to Cleft lip and palate transmembrane protein 1.

RefSeq
ID Definition
NM_001294 Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), mRNA.

Ensembl
ID Definition
ENST00000337392 Cleft lip and palate transmembrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O96005]
ENST00000347493 Cleft lip and palate transmembrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O96005]
 
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