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AS locus structure map

HIX0018211: Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein) (Protein GT197).
Chromosome: 17 Position: 40962150..40976310 (14.2Kbp) Strand: - Number of RASVs: 5
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0018211 11-0000244 (mouse_mrna)
HIX0018211 11-0000686 (mouse_mrna)
HIX0018211 10-0000226 (rat_rna)
HIX0018211 17-0000507 (chimpanzee_rna) low priority
HIX0018211 17-0000936 (chimpanzee_rna)
HIX0018211 16-0000115 (macaque_rna)
HIX0018211 09-0000354 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000034876 BECN1 604378 Cervix, carcinoma Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein) (Protein GT197).
HIT000071117 BECN1 604378 Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein) (Protein GT197).
HIT000056435 BECN1 604378 human retina adult Similar to Beclin 1-like protein (Fragment).
HIT000493243 BECN1 604378 neuroblastoma Similar to Beclin 1-like protein (Fragment).
HIT000494240 BECN1 604378 brain fetal Similar to Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein) (Protein GT197).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000331191 BECN1 604378 coronary artery endothelial cells Similar to Beclin 1 variant (Fragment).
HIT000431517 BECN1 604378 liver Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein) (Protein GT197).

RefSeq
ID Definition
NM_003766 Homo sapiens beclin 1, autophagy related (BECN1), mRNA.

Ensembl
ID Definition
ENST00000361523 Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein)(Protein GT197) [Source:UniProtKB/Swiss- Prot;Acc:Q14457]
ENST00000438274 Beclin-1 (Coiled-coil myosin-like BCL2-interacting protein)(Protein GT197) [Source:UniProtKB/Swiss- Prot;Acc:Q14457]
 
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