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AS locus structure map

HIX0020036: Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
Chromosome: 19 Position: 6677846..6720662 (42.8Kbp) Strand: - Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0020036 19-0000182 (macaque_rna)
HIX0020036 20-0000638 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000435705 C3 612925 Donated clones,Novartis FGA collection Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
HIT000019583 C3 612925 amygdala Similar to Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
HIT000498695 C3 612925 trachea Similar to Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000435726 C3 612925 Donated clones,Novartis FGA collection Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
HIT000191391 C3 612925 liver Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
HIT000261228 C3 612925 Peripheral Nervous System, dorsal root Similar to Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
HIT000278384 C3 612925 HeLa cells Cot 25-normalized Similar to Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].
HIT000435795 C3 612925 Clones donated by RIKEN Similar to Complement C3 precursor (C3 and PZP-like alpha-2-macroglobulin domain- containing protein 1) [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2].

RefSeq
ID Definition
NM_000064 Homo sapiens complement component 3 (C3), mRNA.

Ensembl
ID Definition
ENST00000245907 Complement C3 Precursor (C3 and PZP-like alpha-2- macroglobulin domain-containing protein 1) [Contains Complement C3 beta chain;Complement C3 alpha chain;C3a anaphylatoxin;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2] [Source:UniProtKB/Swiss- Prot;Acc:P01024]
ENST00000428815 Complement C3 Precursor (C3 and PZP-like alpha-2- macroglobulin domain-containing protein 1) [Contains Complement C3 beta chain;Complement C3 alpha chain;C3a anaphylatoxin;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2] [Source:UniProtKB/Swiss- Prot;Acc:P01024]
 
Annotation controller