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AS locus structure map

HIX0021288: FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte- derived ezrin-like protein).
Chromosome: 13 Position: 98794816..99102022 (307.2Kbp) Strand: + Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0021288 15-0000440 (rat_rna)
HIX0021288 13-0000183 (chimpanzee_rna)
HIX0021288 17-0000211 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000096781 FARP1 602654 Brain, astrocytoma, grade IV FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte- derived ezrin-like protein).
HIT000261723 FARP1 602654 Skin, melanotic melanoma. Similar to FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte- derived ezrin-like protein).
HIT000264421 FARP1 602654 Placenta, normal Similar to FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte- derived ezrin-like protein).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000058154 FARP1 602654 chondrocyte cartilage embryo FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte- derived ezrin-like protein).

RefSeq
ID Definition
NM_005766 Homo sapiens FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) (FARP1), transcript variant 1, mRNA.
NM_001001715 Homo sapiens FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) (FARP1), transcript variant 2, mRNA.

Ensembl
ID Definition
ENST00000319562 FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4F1]
ENST00000376581 FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4F1]
ENST00000376584 FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4F1]
ENST00000376586 FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4F1]
ENST00000423063 FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4F1]
ENST00000457029 FERM, RhoGEF and pleckstrin domain-containing protein 1 (Chondrocyte-derived ezrin-like protein) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4F1]
 
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