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AS locus structure map

HIX0023539: Opsin-3 (Encephalopsin) (Panopsin).
Chromosome: 1 Position: 241756452..241803701 (47.2Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0023539 01-0000219 (mouse_mrna)
HIX0023539 01-0000567 (macaque_rna) low priority
HIX0023539 01-0000941 (macaque_rna)
HIX0023539 07-0000269 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000051805 OPN3 606695 Ovary, pooled from 3 adults Opsin-3 (Encephalopsin) (Panopsin).
HIT000265096 OPN3 606695 Kidney, hypernephroma Similar to Opsin-3 (Encephalopsin) (Panopsin).
HIT000260532 OPN3 606695 Brain, adult, 6 pooled whole brains Similar to Opsin-3 (Encephalopsin) (Panopsin).
HIT000429173 OPN3 606695 testis Similar to Opsin-3 (Encephalopsin) (Panopsin).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000076716 OPN3 606695 Opsin-3 (Encephalopsin) (Panopsin).
HIT000071135 OPN3 606695 Opsin-3 (Encephalopsin) (Panopsin).
HIT000099460 OPN3 606695 Brain, Lung, Testis, adult, pooled whole Similar to Opsin-3 (Encephalopsin) (Panopsin).
HIT000279923 OPN3 606695 Placenta Cot 25-normalized Similar to Opsin-3 (Encephalopsin) (Panopsin).
HIT000333925 Prostate, adenocarcinoma. Similar to Opsin-3 (Encephalopsin) (Panopsin).

RefSeq
ID Definition
NM_014322 Homo sapiens opsin 3 (OPN3), mRNA.

Ensembl
ID Definition
ENST00000366554 Opsin-3 (Encephalopsin)(Panopsin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H1Y3]
ENST00000331838 Opsin-3 (Encephalopsin)(Panopsin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H1Y3]
ENST00000456797 Opsin-3 (Encephalopsin)(Panopsin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H1Y3]
 
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