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AS locus structure map

HIX0023586: Lin-9 homolog (huLin-9) (hLin-9) (Beta subunit-associated regulator of apoptosis) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar protein) (pRB-associated protein).
Chromosome: 1 Position: 226408083..226497576 (89.5Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0023586 01-0000243 (mouse_mrna)
HIX0023586 01-0001498 (chimpanzee_rna)
HIX0023586 07-0000292 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000242845 LIN9 609375 Similar to Lin-9 homolog.
HIT000054653 LIN9 609375 human heart adult Lin-9 homolog (huLin-9) (hLin-9) (Beta subunit-associated regulator of apoptosis) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar protein) (pRB-associated protein).
HIT000261864 LIN9 609375 Uterus, leiomyosarcoma Similar to Lin-9 homolog (huLin-9) (hLin-9) (Beta subunit-associated regulator of apoptosis) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar protein) (pRB-associated protein).
HIT000427689 LIN9 609375 brain Similar to Lin-9 homolog.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000046050 LIN9 609375 thymus Similar to Lin-9 homolog.
HIT000098082 LIN9 609375 Testis Lin-9 homolog (huLin-9) (hLin-9) (Beta subunit-associated regulator of apoptosis) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar protein) (pRB-associated protein).
HIT000242846 LIN9 609375 Lin-9 homolog (huLin-9) (hLin-9) (Beta subunit-associated regulator of apoptosis) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar protein) (pRB-associated protein).
HIT000097693 LIN9 609375 Testis Similar to Lin-9 homolog.
HIT000257788 LIN9 609375 Lin-9 homolog (huLin-9) (hLin-9) (Beta subunit-associated regulator of apoptosis) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar protein) (pRB-associated protein).

RefSeq
ID Definition
NM_173083 Homo sapiens lin-9 homolog (C. elegans) (LIN9), mRNA.

Ensembl
ID Definition
ENST00000328205 Lin-9 homolog (huLin-9)(hLin-9)(Beta subunit- associated regulator of apoptosis)(Type I interferon receptor beta chain-associated protein)(TUDOR gene similar protein)(pRB-associated protein) [Source:UniProtKB/Swiss- Prot;Acc:Q5TKA1]
ENST00000366807 Lin-9 homolog (huLin-9)(hLin-9)(Beta subunit- associated regulator of apoptosis)(Type I interferon receptor beta chain-associated protein)(TUDOR gene similar protein)(pRB-associated protein) [Source:UniProtKB/Swiss- Prot;Acc:Q5TKA1]
ENST00000359525 Lin-9 homolog (huLin-9)(hLin-9)(Beta subunit- associated regulator of apoptosis)(Type I interferon receptor beta chain-associated protein)(TUDOR gene similar protein)(pRB-associated protein) [Source:UniProtKB/Swiss- Prot;Acc:Q5TKA1]
ENST00000366801 Lin-9 homolog (huLin-9)(hLin-9)(Beta subunit- associated regulator of apoptosis)(Type I interferon receptor beta chain-associated protein)(TUDOR gene similar protein)(pRB-associated protein) [Source:UniProtKB/Swiss- Prot;Acc:Q5TKA1]
ENST00000366808 Lin-9 homolog (huLin-9)(hLin-9)(Beta subunit- associated regulator of apoptosis)(Type I interferon receptor beta chain-associated protein)(TUDOR gene similar protein)(pRB-associated protein) [Source:UniProtKB/Swiss- Prot;Acc:Q5TKA1]
 
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