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AS locus structure map

HIX0023932: Integrin alpha chain, alpha 6 isoform b precursor.
Chromosome: 2 Position: 173292082..173371181 (79.1Kbp) Strand: + Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0023932 02-0000983 (mouse_mrna)
HIX0023932 03-0000190 (rat_rna)
HIX0023932 36-0000087 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000500473 226730 Brain, cerebellum, PCR rescued clones Integrin alpha chain, alpha 6 isoform b precursor.
HIT000328777 226730 brain Similar to Integrin alpha chain, alpha 6 isoform a precursor.
HIT000491120 226730 thalamus Similar to Integrin alpha chain, alpha 6 isoform b precursor.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000321841 226730 carcinoma pancreas Integrin alpha chain, alpha 6 isoform b precursor.
HIT000322326 226730 keratinocytes Similar to Integrin alpha chain, alpha 6 isoform b precursor.
HIT000500474 226730 Brain, cerebellum, PCR rescued clones Integrin alpha chain, alpha 6 isoform b precursor.
HIT000393904 226730 Similar to Integrin alpha chain, alpha 6 isoform a precursor.

RefSeq
ID Definition
NM_000210 Homo sapiens integrin, alpha 6 (ITGA6), transcript variant 2, mRNA.
NM_001079818 Homo sapiens integrin, alpha 6 (ITGA6), transcript variant 1, mRNA.

Ensembl
ID Definition
ENST00000264107 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000409080 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000264106 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000343713 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000375221 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000409532 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000412899 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000416789 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000442250 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
ENST00000458358 Integrin alpha-6 Precursor (VLA-6)(CD49 antigen- like family member F)(CD49f antigen) [Contains Integrin alpha-6 heavy chain;Integrin alpha-6 light chain] [Source:UniProtKB/Swiss-Prot;Acc:P23229]
 
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