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AS locus structure map

HIX0028720: Similar to C-reactive protein precursor [Contains: C-reactive protein(1-205)].
Chromosome: 1 Position: 159682079..159684379 (2.3Kbp) Strand: - Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0028720 01-0001097 (mouse_mrna) low priority
HIX0028720 13-0000106 (rat_rna)
HIX0028720 01-0001101 (chimpanzee_rna)
HIX0028720 01-0001140 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000322044 CRP 123260 PBMC peripheral blood C-reactive protein precursor [Contains: C-reactive protein(1-205)].
HIT000038948 CRP 123260 Liver Similar to C-reactive protein precursor [Contains: C-reactive protein(1-205)].
HIT000264215 CRP 123260 Liver Similar to C-reactive protein precursor [Contains: C-reactive protein(1-205)].

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000277799 CRP 123260 T cells (Jurkat cell line) Cot 10-normalized C-reactive protein precursor [Contains: C-reactive protein(1-205)].
HIT000388588 CRP 123260 PCR rescued clones C-reactive protein precursor [Contains: C-reactive protein(1-205)].
HIT000422240 CRP 123260 bladder C-reactive protein precursor [Contains: C-reactive protein(1-205)].
HIT000322018 CRP 123260 liver Similar to C-reactive protein precursor [Contains: C-reactive protein(1-205)].

RefSeq
ID Definition
NM_000567 Homo sapiens C-reactive protein, pentraxin-related (CRP), mRNA.

Ensembl
ID Definition
ENST00000255030 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
ENST00000343919 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
ENST00000368110 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
ENST00000368111 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
ENST00000368112 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
ENST00000437342 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
ENST00000447843 C-reactive protein Precursor [Contains C-reactive protein(1-205)] [Source:UniProtKB/Swiss-Prot;Acc:P02741]
 
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