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AS locus structure map

HIX0037297: Protocadherin 17 precursor.
Chromosome: 13 Position: 58205789..58303065 (97.3Kbp) Strand: + Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0037297 14-0000496 (mouse_mrna)
HIX0037297 15-0000655 (rat_rna)
HIX0037297 17-0000059 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000422777 PCDH17 611760 hippocampus Protocadherin 17 precursor.
HIT000062978 PCDH17 611760 Similar to Protocadherin 17 precursor.
HIT000426411 PCDH17 611760 lung Similar to Protocadherin 17 precursor.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000091518 PCDH17 611760 Brain, fetal, whole pooled Protocadherin 17 precursor.

RefSeq
ID Definition
NM_001040429 Homo sapiens protocadherin 17 (PCDH17), mRNA.

Ensembl
ID Definition
ENST00000377918 Protocadherin-17 Precursor (Protocadherin-68) [Source:UniProtKB/Swiss-Prot;Acc:O14917]
ENST00000448267 Protocadherin-17 Precursor (Protocadherin-68) [Source:UniProtKB/Swiss-Prot;Acc:O14917]
 
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