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AS locus structure map

HIX0038125: Thrombospondin-1 precursor.
Chromosome: 15 Position: 39873279..39889668 (16.4Kbp) Strand: + Number of RASVs: 3
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0038125 30-0000051 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000321055 THBS1 188060 umbilical vein endothelial cells Thrombospondin-1 precursor.
HIT000428479 THBS1 188060 normal mesangial cells (NHMC56046-2) Similar to Thrombospondin-1 precursor.
HIT000499378 THBS1 188060 uterus Similar to Thrombospondin-1 precursor.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000500486 THBS1 188060 Testicle, PCR rescued clones Thrombospondin-1 precursor.
HIT000500487 THBS1 188060 Testicle, PCR rescued clones Thrombospondin-1 precursor.
HIT000194328 THBS1 188060 Similar to Thrombospondin-1 precursor.
HIT000321462 THBS1 188060 fibroblast and epithelial Thrombospondin-1 precursor.
HIT000329847 THBS1 188060 aorta endothelial cell Thrombospondin-1 precursor.
HIT000424436 THBS1 188060 placenta Thrombospondin-1 precursor.

RefSeq
ID Definition
NM_003246 Homo sapiens thrombospondin 1 (THBS1), mRNA.

Ensembl
ID Definition
ENST00000260356 Thrombospondin-1 Precursor [Source:UniProtKB/Swiss-Prot;Acc:P07996]
ENST00000397591 Thrombospondin-1 Precursor [Source:UniProtKB/Swiss-Prot;Acc:P07996]
ENST00000397593 Thrombospondin-1 Precursor [Source:UniProtKB/Swiss-Prot;Acc:P07996]
 
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