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AS locus structure map

HIX0039036: Integrin beta 4 isoform 3 precursor.
Chromosome: 17 Position: 73717516..73753899 (36.4Kbp) Strand: + Number of RASVs: 5
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0039036 11-0001342 (mouse_mrna)
HIX0039036 17-0000812 (chimpanzee_rna)
HIX0039036 16-0000931 (macaque_rna)
HIX0039036 09-0000127 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000389003 226730 Cerebellum, Lung, PCR rescued clones Integrin beta 4 isoform 3 precursor.
HIT000502185 226730 Cerebellum, Lung, PCR rescued clones Integrin beta 4 isoform 3 precursor.
HIT000321842 226730 carcinoma pancreas Integrin beta 4 isoform 1 precursor.
HIT000429818 226730 trachea Similar to Integrin beta 4 isoform 3 precursor.
HIT000499416 226730 uterus Similar to Integrin beta 4 isoform 3 precursor.

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000321701 226730 retinal pigment epithelial cells fetus Integrin beta 4 isoform 3 precursor.
HIT000502181 226730 Cerebellum, Lung, PCR rescued clones Integrin beta 4 isoform 3 precursor.
HIT000387918 226730 PCR rescued clones Integrin beta 4 isoform 3 precursor.

RefSeq
ID Definition
NM_000213 Homo sapiens integrin, beta 4 (ITGB4), transcript variant 1, mRNA.
NM_001005619 Homo sapiens integrin, beta 4 (ITGB4), transcript variant 2, mRNA.
NM_001005731 Homo sapiens integrin, beta 4 (ITGB4), transcript variant 3, mRNA.

Ensembl
ID Definition
ENST00000200181 Integrin beta-4 Precursor (GP150)(CD104 antigen) [Source:UniProtKB/Swiss-Prot;Acc:P16144]
ENST00000339591 Integrin beta-4 Precursor (GP150)(CD104 antigen) [Source:UniProtKB/Swiss-Prot;Acc:P16144]
ENST00000449880 Integrin beta-4 Precursor (GP150)(CD104 antigen) [Source:UniProtKB/Swiss-Prot;Acc:P16144]
ENST00000450894 Integrin beta-4 Precursor (GP150)(CD104 antigen) [Source:UniProtKB/Swiss-Prot;Acc:P16144]
ENST00000455850 Integrin beta-4 Precursor (GP150)(CD104 antigen) [Source:UniProtKB/Swiss-Prot;Acc:P16144]
 
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