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AS locus structure map

HIX0200727: Similar to Interferon regulatory factor 1 (IRF-1).
Chromosome: 5 Position: 131746673..131822549 (75.9Kbp) Strand: + Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0200727 11-0001469 (mouse_mrna) low priority
HIX0200727 10-0000347 (rat_rna) low priority
HIX0200727 05-0000397 (chimpanzee_rna) low priority
HIX0200727 05-0000756 (chimpanzee_rna)
HIX0200727 06-0000244 (macaque_rna) low priority
HIX0200727 06-0000903 (macaque_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000048755 C5orf56 spleen Conserved hypothetical protein.
HIT000021796 C5orf56 small intestine Conserved hypothetical protein.
HIT000057070 human salivary gland adult Hypothetical protein.
HIT000428057 C5orf56 thalamus Similar to Interferon regulatory factor 1 (IRF-1).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000067024 Conserved hypothetical protein.

RefSeq
ID Definition
NM_001013717 Homo sapiens chromosome 5 open reading frame 56 (C5orf56), mRNA.

Ensembl
ID Definition
ENST00000337752 Putative uncharacterized protein LOC441108 [Source:UniProtKB/Swiss-Prot;Acc:Q8N8D9]
ENST00000378947 Putative uncharacterized protein LOC441108 [Source:UniProtKB/Swiss-Prot;Acc:Q8N8D9]
ENST00000378953 Putative uncharacterized protein LOC441108 [Source:UniProtKB/Swiss-Prot;Acc:Q8N8D9]
ENST00000407797 Putative uncharacterized protein LOC441108 [Source:UniProtKB/Swiss-Prot;Acc:Q8N8D9]
ENST00000443093
 
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