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AS locus structure map

HIX0203119: Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
Chromosome: 21 Position: 40714235..40721573 (7.3Kbp) Strand: - Number of RASVs: 5
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
Hyperlink management Corresponding other species locus
HIX0203119 11-0000151 (rat_rna)
HIX0203119 21-0000104 (chimpanzee_rna)
HIX0203119 03-0000434 (macaque_rna)
HIX0203119 31-0000104 (dog_rna)

RASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000039709 HMGN1 163920 Bone marrow, acute myelogenous leukemia Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000280988 HMGN1 163920 Fetal liver Similar to Nonhistone chromosomal protein HMG-14 (Fragment).
HIT000295835 HMGN1 163920 Placenta Similar to Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000304824 HMGN1 163920 Neuroblastoma Cot 25-normalized Similar to Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000329180 HMGN1 163920 brain Similar to Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).

Other ASV
Hyperlink management HUGO OMIM Cell type Tissue type Development stage Sex Definition
HIT000029324 HMGN1 163920 Brain, neuroblastoma Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000100257 HMGN1 163920 Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000191073 HMGN1 163920 Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000264111 HMGN1 163920 Pooled, 40 cell lines Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000276716 HMGN1 163920 Neuroblastoma Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000298692 HMGN1 163920 B cells (Ramos cell line) Cot 25-normalized Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000298978 HMGN1 163920 Neuroblastoma Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000299695 HMGN1 163920 Placenta Cot 25-normalized Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000338441 HMGN1 163920 Ovary, adenocarcinoma Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000264112 HMGN1 163920 Pooled, 40 cell lines Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000264470 HMGN1 163920 Skin, melanotic melanoma. Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000264911 HMGN1 163920 Skin, melanotic melanoma. Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000338871 HMGN1 163920 Pooled, 40 cell lines Non-histone chromosomal protein HMG-14 (High-mobility group nucleosome-binding domain-containing protein 1).
HIT000434276 HMGN1 163920 tongue, tumor tissue Non-protein coding transcript.

RefSeq
ID Definition
NM_004965 Homo sapiens high-mobility group nucleosome binding domain 1 (HMGN1), mRNA.

Ensembl
ID Definition
ENST00000380749 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000288344 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000361263 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000380747 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000380748 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000419378 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000431116
ENST00000431390 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000436324 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000443046 Non-histone chromosomal protein HMG-14 (High- mobility group nucleosome-binding domain-containing protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P05114]
ENST00000453328
 
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