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AS locus structure map

06-0000151: Macaca fascicularis brain cDNA clone: QtrA-18438, similar to human protocadherin gamma subfamily C, 3 (PCDHGC3), transcriptvariant 1, mRNA, RefSeq: NM_002588.2.
Chromosome: 6 Position: 137734527..137908118 (173.6Kbp) Strand: + Number of RASVs: 13
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
06-0000151 HIX0005252

RASV
ID Cell type Tissue type Development stage Sex Definition
ENSMMUT00000030894
AB174649 adult male Macaca fascicularis brain cDNA clone: QtrA-18438, similar to human protocadherin gamma subfamily C, 3 (PCDHGC3), transcriptvariant 1, mRNA, RefSeq: NM_002588.2.
ENSMMUT00000030878
ENSMMUT00000030885
ENSMMUT00000030890
ENSMMUT00000030891
ENSMMUT00000030893
ENSMMUT00000030897
ENSMMUT00000030899
ENSMMUT00000030900
XM_001088004 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 3 isoform 2 precursor (LOC699549), mRNA.
XM_001088782 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily B, 7 isoform 1 precursor (LOC700430), mRNA.
XM_001088899 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 11 isoform 1 precursor (LOC700549), mRNA.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
XR_011267 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 12 isoform 2 precursor (LOC702071), mRNA.

RefSeq
ID Definition
XM_001088343 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 6 isoform 2 precursor (LOC699916), mRNA.
XR_010763 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily B, 8 (LOC700669), mRNA.
XR_011267 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 12 isoform 2 precursor (LOC702071), mRNA.
XR_011315 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily C, 3 isoform 2 precursor (LOC702507), mRNA.
XR_011333 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 10 isoform 2 precursor (LOC702640), mRNA.
XM_001088004 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 3 isoform 2 precursor (LOC699549), mRNA.
XM_001088782 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily B, 7 isoform 1 precursor (LOC700430), mRNA.
XM_001088899 PREDICTED: Macaca mulatta similar to protocadherin gamma subfamily A, 11 isoform 1 precursor (LOC700549), mRNA.

Ensembl
ID Definition
ENSMMUT00000030894
ENSMMUT00000030878
ENSMMUT00000030885
ENSMMUT00000030890
ENSMMUT00000030891
ENSMMUT00000030893
ENSMMUT00000030897
ENSMMUT00000030899
ENSMMUT00000030900
 
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