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AS locus structure map

01-0000164: Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370019N06 product:presenilin 2, full insert sequence.
Chromosome: 1 Position: 182157135..182186431 (29.3Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
01-0000164 HIX0001647

RASV
Hyperlink management Cell type Tissue type Development stage Sex Definition
AK154119 NOD-derived CD11c +ve dendritic cells Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630003C09 product:presenilin 2, full insert sequence.
AK014706 head 0 day neonate Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833416A15 product:presenilin 2, full insert sequence.
AK077576 whole body 8 days embryo Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730454K04 product:presenilin 2, full insert sequence.
U57325 Mus musculus PS-2short mRNA, complete cds.

Other ASV
Hyperlink management Cell type Tissue type Development stage Sex Definition
AF038935 Mus musculus presenilin 2 mRNA, complete cds.
AK148111 B16 F10Y cells Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370019N06 product:presenilin 2, full insert sequence.
AY864737 brain Mus musculus strain Swiss Albino presenilin 2 mRNA, partial cds.
BC010403 Mammary tumor. WAP-TGF alpha model. 7 months Mus musculus presenilin 2, mRNA (cDNA clone MGC:13863 IMAGE:4038761), complete cds.
U57324 Mus musculus PS-2 mRNA, complete cds.

RefSeq
ID Definition
NM_001128605 Mus musculus presenilin 2 (Psen2), transcript variant 2, mRNA.
NM_011183 Mus musculus presenilin 2 (Psen2), transcript variant 1, mRNA.

Ensembl
ID Definition
ENSMUST00000010753 Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2 NTF subunit; Presenilin-2 CTF subunit]. [Source:Uniprot/SWISSPROT;Acc:Q61144]
ENSMUST00000111104 Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2 NTF subunit; Presenilin-2 CTF subunit]. [Source:Uniprot/SWISSPROT;Acc:Q61144]
ENSMUST00000111105 Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2 NTF subunit; Presenilin-2 CTF subunit]. [Source:Uniprot/SWISSPROT;Acc:Q61144]
ENSMUST00000111106 Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2 NTF subunit; Presenilin-2 CTF subunit]. [Source:Uniprot/SWISSPROT;Acc:Q61144]
ENSMUST00000111108 Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2 NTF subunit; Presenilin-2 CTF subunit]. [Source:Uniprot/SWISSPROT;Acc:Q61144]
 
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