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AS locus structure map

09-0000422: Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230101H05 product:vacuolar protein sorting 11 (yeast), full insert sequence.
Chromosome: 9 Position: 44155832..44169753 (13.9Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
09-0000422 HIX0010281

RASV
Hyperlink management Cell type Tissue type Development stage Sex Definition
BC029004 Eye, retina, mouse strain C57Bl6 Mus musculus vacuolar protein sorting 11 (yeast), mRNA (cDNA clone MGC:38813 IMAGE:5360111), complete cds.
AK032484 olfactory brain adult male Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430563F09 product:VACUOLAR PROTEIN SORTING PROTEIN 11 homolog [Homo sapiens], full insert sequence.
AK037658 thymus 16 days neonate Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130034L12 product:vacuolar protein sorting 11 (yeast), full insert sequence.
AK047228 cerebellum 10 days neonate Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930037H14 product:RIKEN cDNA 1200011A11 gene, full insert sequence.

Other ASV
Hyperlink management Cell type Tissue type Development stage Sex Definition
AK004695 lung adult male Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200011A11 product:VACUOLAR PROTEIN SORTING PROTEIN 11 homolog [Homo sapiens], full insert sequence.
AK090030 B cells Mus musculus B cells CRL-1669 BCL1 Clone 13.20-3B3 cDNA, RIKEN full-length enriched library, clone:G430067E18 product:HVPS11 homolog [Homo sapiens], full insert sequence.
AK153963 thymic cells thymus 2 days neonate Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430014E14 product:vacuolar protein sorting 11 (yeast), full insert sequence.
AK162897 hypothalamus adult male Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230101H05 product:vacuolar protein sorting 11 (yeast), full insert sequence.

RefSeq
ID Definition
NM_027889 Mus musculus vacuolar protein sorting 11 (yeast) (Vps11), mRNA.

Ensembl
ID Definition
ENSMUST00000034644 Vacuolar protein sorting-associated protein 11 homolog. [Source:Uniprot/SWISSPROT;Acc:Q91W86]
 
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