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AS locus structure map

18-0000001: Mus musculus protocadherin alpha 6, mRNA (cDNA clone IMAGE:6841317), partial cds.
Chromosome: 18 Position: 37089838..38001616 (911.8Kbp) Strand: + Number of RASVs: 40
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
18-0000001 HIX0005243
18-0000001 HIX0005252

RASV
Hyperlink management Cell type Tissue type Development stage Sex Definition
AY013757 brain Mus musculus protocadherin alpha 10 mRNA, complete cds.
AY013765 brain Mus musculus protocadherin alpha 7 mRNA, complete cds.
AY013759 brain Mus musculus protocadherin alpha 12 mRNA, complete cds.
AY013763 brain Mus musculus protocadherin alpha 5 mRNA, complete cds.
AY013758 brain Mus musculus protocadherin alpha 11 mRNA, complete cds.
AY013767 brain Mus musculus protocadherin alpha 9 mRNA, complete cds.
AY013796 brain Mus musculus protocadherin gamma A2 mRNA, complete cds.
BC054557 Brain, mouse 15.5 dpc Mus musculus protocadherin gamma subfamily B, 2, mRNA (cDNA clone MGC:62459 IMAGE:5706538), complete cds.
BC054528 Brain, mouse 15.5 dpc Mus musculus protocadherin gamma subfamily A, 12, mRNA (cDNA clone MGC:62248 IMAGE:5719201), complete cds.
AY013762 brain Mus musculus protocadherin alpha 4 mRNA, complete cds.
AF464163 Mus musculus protocadherin gamma C-V mRNA, complete cds.
AK043491 cerebellum 7 days neonate Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730099K01 product:protocadherin gamma subfamily A, 5, full insert sequence.
BC059175 Brain, mouse 15.5 dpc Mus musculus protocadherin gamma subfamily C, 3, mRNA (cDNA clone MGC:62397 IMAGE:5704674), complete cds.
BC064808 Brain, mouse, 13.5,14.5,16.5,17.5 dpc Mus musculus protocadherin gamma subfamily C, 4, mRNA (cDNA clone MGC:66828 IMAGE:6825007), complete cds.
BC054555 Brain, enriched mouse brain 12.5dpc Mus musculus protocadherin gamma subfamily A, 8, mRNA (cDNA clone MGC:62443 IMAGE:5698395), complete cds.
BC035540 Eye, retina, mouse strain C57Bl6 Mus musculus protocadherin gamma subfamily A, 10, mRNA (cDNA clone MGC:40648 IMAGE:5400956), complete cds.
BC059837 Brain, mouse 15.5 dpc Mus musculus protocadherin gamma subfamily A, 11, mRNA (cDNA clone MGC:69643 IMAGE:5719590), complete cds.
BC060691 Brain, enriched mouse brain 12.5dp Mus musculus protocadherin gamma subfamily A, 3, mRNA (cDNA clone MGC:66827 IMAGE:6409513), complete cds.
BC080852 Brain, mouse, 13.5,14.5,16.5,17.5 dpc Mus musculus protocadherin gamma subfamily A, 6, mRNA (cDNA clone MGC:90624 IMAGE:6844625), complete cds.
BC077712 Brain, mouse, 13.5,14.5,16.5,17.5 dpc Mus musculus protocadherin gamma subfamily A, 7, mRNA (cDNA clone MGC:66826 IMAGE:6825399), complete cds.
BC079567 Brain Mus musculus protocadherin gamma subfamily A, 9, mRNA (cDNA clone MGC:90623 IMAGE:30536557), complete cds.
BC054741 Brain, enriched mouse brain 12.5dpc Mus musculus protocadherin gamma subfamily B, 1, mRNA (cDNA clone MGC:65699 IMAGE:5721217), complete cds.
AY013807 brain Mus musculus protocadherin gamma B5 mRNA, complete cds.
BC054556 Brain, enriched mouse brain 12.5dpc Mus musculus protocadherin gamma subfamily B, 6, mRNA (cDNA clone MGC:62446 IMAGE:5702016), complete cds.
BC066823 Neural Stem Cell, (Differentiated), adult Mus musculus protocadherin gamma subfamily B, 7, mRNA (cDNA clone MGC:76584 IMAGE:30098739), complete cds.
AF464160 Mus musculus protocadherin C5 gamma C-I mRNA, complete cds.
AF464161 Mus musculus protocadherin gamma C-II precursor RNA, partial sequence.
AF464162 Mus musculus protocadherin gamma C-III precursor RNA, partial sequence.
AF464164 Mus musculus protocadherin gamma C-VI mRNA, complete cds.
AF464180 Mus musculus protocadherin mRNA, complete cds.
AK083581 whole body 9 days embryo Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030048N19 product:protocadherin gamma subfamily B, 4, full insert sequence.
AK139436 cortex 10 days neonate Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830082M15 product:protocadherin alpha 11, full insert sequence.
AY013792 brain Mus musculus protocadherin gamma A1 mRNA, complete cds.
AY013806 brain Mus musculus protocadherin gamma B4 mRNA, complete cds.
AY013810 brain Mus musculus protocadherin gamma B8 mRNA, complete cds.
BC054813 Brain Mus musculus protocadherin alpha 6, mRNA (cDNA clone IMAGE:6841317), partial cds.
BC060211 Brain Mus musculus protocadherin alpha 4, mRNA (cDNA clone MGC:64735 IMAGE:6838078), complete cds.
BC082326 Brain, mouse, 13.5,14.5,16.5,17.5 dpc Mus musculus protocadherin alpha 1, mRNA (cDNA clone MGC:90628 IMAGE:30356350), complete cds.
BC098367 Brain Mus musculus protocadherin gamma subfamily B, 1, mRNA (cDNA clone MGC:101993 IMAGE:30362494), complete cds.
BC098457 Eye Mus musculus protocadherin gamma subfamily C, 3, mRNA (cDNA clone MGC:106426 IMAGE:30653042), complete cds.

Other ASV
Hyperlink management Cell type Tissue type Development stage Sex Definition
AB008178 brain P0 and P30 Mus musculus CNR3 mRNA for Cadherin-related neural recepter 3, partial cds.
AF464159 Mus musculus protocadherin gamma A12 mRNA, partial cds.
BC079625 Brain Mus musculus cDNA clone IMAGE:30536554, containing frame-shift errors.
AB008179 brain P0 and P30 Mus musculus CNR4 mRNA for Cadherin-related neural recepter 4, partial cds.
BC080863 Brain Mus musculus protocadherin alpha 7, mRNA (cDNA clone MGC:90581 IMAGE:30356469), complete cds.
AB008180 brain P0 and P30 Mus musculus CNR5 mRNA for Cadherin-related neural recepter 5, partial cds.
AB008181 brain P0 and P30 Mus musculus CNR6 mRNA for Cadherin-related neural recepter 6, partial cds.
AB008182 brain P0 and P30 Mus musculus CNR7 mRNA for Cadherin-related neural recepter 7, partial cds.
AK043705 cortex 10 days neonate Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830022B16 product:protocadherin alpha 11, full insert sequence.
AB008183 brain P0 and P30 Mus musculus CNR8 mRNA for Cadherin-related neural recepter 8, partial cds.
AB093250 brain adult Mus musculus mRNA for mKIAA0327 splice variant 1.
AF464151 Mus musculus clone 1 protocadherin gamma B2 mRNA, partial cds.
AF464152 Mus musculus clone 2 protocadherin gamma B2 mRNA, partial cds.
AY013805 brain Mus musculus protocadherin gamma B2 mRNA, complete cds.
AF464156 Mus musculus clone 1 protocadherin gamma A12 mRNA, partial cds.
AF464158 Mus musculus clone 3 protocadherin gamma A12 mRNA, partial cds.
AY013795 brain Mus musculus protocadherin gamma A12 mRNA, complete cds.
BC056998 Brain, mouse, 13.5,14.5,16.5,17.5 dpc Mus musculus protocadherin gamma subfamily A, 12, mRNA (cDNA clone MGC:66980 IMAGE:6831906), complete cds.
U88550 Mus musculus protocadherin 2C mRNA, complete cds.
AK129120 brain adult Mus musculus mRNA for mKIAA0345 protein.
AK149282 retina adult Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930010F15 product:protocadherin alpha 4, full insert sequence.
AY013756 brain Mus musculus protocadherin alpha 1 mRNA, complete cds.
AY013760 brain Mus musculus protocadherin alpha 2 mRNA, complete cds.
AY013761 brain Mus musculus protocadherin alpha 3 mRNA, complete cds.
AY013764 brain Mus musculus protocadherin alpha 6 mRNA, complete cds.
AY013766 brain Mus musculus protocadherin alpha 8 mRNA, complete cds.
AY013768 brain Mus musculus protocadherin alpha C1 mRNA, complete cds.
AY013769 brain Mus musculus protocadherin alpha C2 mRNA, complete cds.
BC030897 Eye, retina, mouse strain C57Bl6 Mus musculus protocadherin alpha 6, mRNA (cDNA clone IMAGE:4502027), partial cds.
D86916 brain Mus musculus mRNA for CNR1, complete cds.
D86917 brain Mus musculus mRNA for CNR2, complete cds.
AY013813 brain Mus musculus protocadherin gamma C5 mRNA, complete cds.
AY013799 brain Mus musculus protocadherin gamma A5 mRNA, complete cds.
BC057404 Brain, enriched mouse brain 12.5dp Mus musculus protocadherin gamma subfamily A, 5, mRNA (cDNA clone MGC:62507 IMAGE:6405582), complete cds.
AK086361 head 15 days embryo Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930024A08 product:protocadherin gamma subfamily C, 3, full insert sequence.
AY013811 brain Mus musculus protocadherin gamma C3 mRNA, complete cds.
BC040826 Eye, retina, mouse strain C57Bl6 Mus musculus protocadherin gamma subfamily C, 3, mRNA (cDNA clone IMAGE:4504356), partial cds.
AK139349 cortex 10 days neonate Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830020K06 product:protocadherin gamma subfamily C, 4, full insert sequence.
AY013812 brain Mus musculus protocadherin gamma C4 mRNA, complete cds.
AK220461 fetal brain Mus musculus mRNA for mKIAA0327 protein.
AY013802 brain Mus musculus protocadherin gamma A8 mRNA, complete cds.
BC054787 Brain, mouse, 13.5,14.5,16.5,17.5 dpc Mus musculus protocadherin gamma subfamily A, 8, mRNA (cDNA clone MGC:65713 IMAGE:6825772), complete cds.
AY013793 brain Mus musculus protocadherin gamma A10 mRNA, complete cds.
AY013794 brain Mus musculus protocadherin gamma A11 mRNA, complete cds.
BC064675 Brain, enriched mouse brain 12.5dp Mus musculus protocadherin gamma subfamily A, 11, mRNA (cDNA clone MGC:66825 IMAGE:6406939), complete cds.
AY013797 brain Mus musculus protocadherin gamma A3 mRNA, complete cds.
AY013800 brain Mus musculus protocadherin gamma A6 mRNA, complete cds.
BC059927 Brain Mus musculus protocadherin gamma subfamily A, 6, mRNA (cDNA clone IMAGE:6838828).
AY013801 brain Mus musculus protocadherin gamma A7 mRNA, complete cds.
AY013803 brain Mus musculus protocadherin gamma A9 mRNA, complete cds.
AY013804 brain Mus musculus protocadherin gamma B1 mRNA, complete cds.
BC057403 Brain, mouse 15.5 dpc Mus musculus protocadherin gamma subfamily B, 5, mRNA (cDNA clone IMAGE:5704806), partial cds.
AY013808 brain Mus musculus protocadherin gamma B6 mRNA, complete cds.
AY013809 brain Mus musculus protocadherin gamma B7 mRNA, complete cds.

RefSeq
ID Definition
NM_001003671 Mus musculus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.
NM_001003672 Mus musculus protocadherin alpha subfamily C, 2 (Pcdhac2), mRNA.
NM_007766 Mus musculus protocadherin alpha 4 (Pcdha4), mRNA.
NM_007767 Mus musculus protocadherin alpha 6 (Pcdha6), mRNA.
NM_009957 Mus musculus protocadherin alpha 7 (Pcdha7), mRNA.
NM_009959 Mus musculus protocadherin alpha 5 (Pcdha5), mRNA.
NM_009960 Mus musculus protocadherin alpha 11 (Pcdha11), mRNA.
NM_009961 Mus musculus protocadherin alpha 10 (Pcdha10), mRNA.
NM_033574 Mus musculus protocadherin gamma subfamily B, 1 (Pcdhgb1), mRNA.
NM_033575 Mus musculus protocadherin gamma subfamily B, 2 (Pcdhgb2), mRNA.
NM_033576 Mus musculus protocadherin gamma subfamily B, 4 (Pcdhgb4), mRNA.
NM_033577 Mus musculus protocadherin gamma subfamily B, 5 (Pcdhgb5), mRNA.
NM_033578 Mus musculus protocadherin gamma subfamily B, 6 (Pcdhgb6), mRNA.
NM_033579 Mus musculus protocadherin gamma subfamily B, 7 (Pcdhgb7), mRNA.
NM_033580 Mus musculus protocadherin gamma subfamily B, 8 (Pcdhgb8), mRNA.
NM_033581 Mus musculus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.
NM_033582 Mus musculus protocadherin gamma subfamily C, 4 (Pcdhgc4), mRNA.
NM_033583 Mus musculus protocadherin gamma subfamily C, 5 (Pcdhgc5), mRNA.
NM_033584 Mus musculus protocadherin gamma subfamily A, 1 (Pcdhga1), mRNA.
NM_033585 Mus musculus protocadherin gamma subfamily A, 2 (Pcdhga2), mRNA.
NM_033586 Mus musculus protocadherin gamma subfamily A, 3 (Pcdhga3), mRNA.
NM_033587 Mus musculus protocadherin gamma subfamily A, 4 (Pcdhga4), mRNA.
NM_033588 Mus musculus protocadherin gamma subfamily A, 5 (Pcdhga5), mRNA.
NM_033589 Mus musculus protocadherin gamma subfamily A, 6 (Pcdhga6), mRNA.
NM_033590 Mus musculus protocadherin gamma subfamily A, 7 (Pcdhga7), mRNA.
NM_033591 Mus musculus protocadherin gamma subfamily A, 8 (Pcdhga8), mRNA.
NM_033592 Mus musculus protocadherin gamma subfamily A, 9 (Pcdhga9), mRNA.
NM_033593 Mus musculus protocadherin gamma subfamily A, 10 (Pcdhga10), mRNA.
NM_033594 Mus musculus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.
NM_033595 Mus musculus protocadherin gamma subfamily A, 12 (Pcdhga12), mRNA.
NM_054072 Mus musculus protocadherin alpha 1 (Pcdha1), mRNA.
NM_138661 Mus musculus protocadherin alpha 9 (Pcdha9), mRNA.
NM_138662 Mus musculus protocadherin alpha 3 (Pcdha3), mRNA.
NM_138663 Mus musculus protocadherin alpha 12 (Pcdha12), mRNA.
NM_198117 Mus musculus protocadherin alpha 2 (Pcdha2), mRNA.
NM_201243 Mus musculus protocadherin alpha 8 (Pcdha8), mRNA.
XM_001475958 PREDICTED: Mus musculus similar to protocadherin (LOC100046137), mRNA.
XM_001475979 PREDICTED: Mus musculus similar to protocadherin alpha 11 (LOC100046214), mRNA.
XM_001476677 PREDICTED: Mus musculus similar to protocadherin gamma B5 (LOC100046488), mRNA.
XM_908918 PREDICTED: Mus musculus protocadherin alpha cluster (Pcdha@), mRNA.
XM_908963 PREDICTED: Mus musculus similar to protocadherin alpha 12 (LOC634282), mRNA.
XR_032149 PREDICTED: Mus musculus similar to protocadherin alpha 8 (LOC100045966), misc RNA.
XR_032266 PREDICTED: Mus musculus similar to protocadherin gamma A3 (LOC100046045), misc RNA.

Ensembl
ID Definition
ENSMUST00000003599 protocadherin gamma subfamily A, 2 [Source:RefSeq_peptide;Acc:NP_291063]
ENSMUST00000007584 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000044851 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000047479 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000047614 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000055935 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000061279 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000063763 protocadherin alpha 6 [Source:RefSeq_peptide;Acc:NP_031793]
ENSMUST00000066140 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000066149 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000070797 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000073447 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000076807 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000091934 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000091935 protocadherin gamma subfamily A, 3 [Source:RefSeq_peptide;Acc:NP_291064]
ENSMUST00000115657 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000115658 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000115659 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000115661 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
ENSMUST00000115662 Protocadherin alpha 4 precursor (PCDH-alpha4). [Source:Uniprot/SWISSPROT;Acc:O88689]
 
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