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AS locus structure map

10-0000280: Rattus norvegicus tumor necrosis factor ligand superfamily member 12, mRNA (cDNA clone MGC:94097 IMAGE:7125293), complete cds.
Chromosome: 10 Position: 56499945..56513053 (13.1Kbp) Strand: - Number of RASVs: 4
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
10-0000280 HIX0013500
10-0000280 HIX0202492

RASV
ID Cell type Tissue type Development stage Sex Definition
NM_001001513 Rattus norvegicus tumor necrosis factor ligand superfamily member 12 (Tnfsf12), mRNA.
BC087135 Lung, rat (Brown Norway) Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13, mRNA (cDNA clone MGC:95053 IMAGE:7123934), complete cds.
ENSRNOT00000019085
ENSRNOT00000056903 Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13, mRNA (cDNA clone MGC:95053 IMAGE:7123934), complete cds; BC087135.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
AY607588 Rattus norvegicus TNF-related weak inducer of apoptosis (Tnfsf12) mRNA, complete cds.
BC079107 Lung, rat (Brown Norway) Rattus norvegicus tumor necrosis factor ligand superfamily member 12, mRNA (cDNA clone MGC:94097 IMAGE:7125293), complete cds.
NM_001009623 Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13 (Tnfsf13), mRNA.

RefSeq
ID Definition
NM_001001513 Rattus norvegicus tumor necrosis factor ligand superfamily member 12 (Tnfsf12), mRNA.
NM_001009623 Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13 (Tnfsf13), mRNA.

Ensembl
ID Definition
ENSRNOT00000019085
ENSRNOT00000056903 Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13, mRNA (cDNA clone MGC:95053 IMAGE:7123934), complete cds; BC087135.
 
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