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AS locus structure map

13-0000078: Rattus norvegicus chemokine receptor LCR1 mRNA, complete cds.
Chromosome: 13 Position: 41308286..41312190 (3.9Kbp) Strand: - Number of RASVs: 2
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
13-0000078 HIX0002482

RASV
ID Cell type Tissue type Development stage Sex Definition
BC089804 Thymus, rat Rattus norvegicus chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone MGC:108696 IMAGE:7380432), complete cds.
U54791 Rattus norvegicus chemokine receptor LCR1 mRNA, complete cds.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
ENSRNOT00000061220 Rattus norvegicus strain Holtzman chemokine receptor CXCR4 (Cxcr4) gene, complete cds; AF452185.
NM_022205 Rattus norvegicus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA.

RefSeq
ID Definition
NM_022205 Rattus norvegicus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA.

Ensembl
ID Definition
ENSRNOT00000005143
ENSRNOT00000061220 Rattus norvegicus strain Holtzman chemokine receptor CXCR4 (Cxcr4) gene, complete cds; AF452185.
 
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