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AS locus structure map

18-0000002: Rattus norvegicus protocadherin gamma a1 (Pcdhga1) mRNA, complete cds.
Chromosome: 18 Position: 30568805..30754206 (185.4Kbp) Strand: + Number of RASVs: 16
ORF: Full-length Truncated NMD UTR
Splice-site: GT-AG GC-AG AT-AC Other NAGNAG
AS: AS exon AS junction Polymorphism: SNP

Locus and transcript information


AS locus
ID Corresponding human locus
18-0000002 HIX0005252

RASV
ID Cell type Tissue type Development stage Sex Definition
NM_001037156 Rattus norvegicus protocadherin gamma subfamily A, 8 (Pcdhga8), mRNA.
AY574008 Rattus norvegicus protocadherin gamma a1 (Pcdhga1) mRNA, complete cds.
AY574010 Rattus norvegicus protocadherin gamma a11 (Pcdhga11) mRNA, complete cds.
AY574011 Rattus norvegicus protocadherin gamma a12 (Pcdhga12) mRNA, complete cds.
AY574012 Rattus norvegicus protocadherin gamma a2 (Pcdhga2) mRNA, complete cds, alternatively spliced.
AY574014 Rattus norvegicus protocadherin gamma a3 (Pcdhga3) mRNA, complete cds.
AY574016 Rattus norvegicus protocadherin gamma a5 (Pcdhga5) mRNA, complete cds.
AY574018 Rattus norvegicus protocadherin gamma a7 (Pcdhga7) mRNA, complete cds.
AY574020 Rattus norvegicus protocadherin gamma a9 (Pcdhga9) mRNA, complete cds.
AY574027 Rattus norvegicus protocadherin gamma b8 (Pcdhgb8) mRNA, complete cds.
AY574028 Rattus norvegicus protocadherin gamma c3 (Pcdhgc3) mRNA, complete cds.
BC087084 Heart, rat (Brown Norway) Rattus norvegicus protocadherin gamma b7, mRNA (cDNA clone MGC:94552 IMAGE:7189313), complete cds.
AY574013 Rattus norvegicus protocadherin gamma a2 (Pcdhga2) mRNA, complete cds, alternatively spliced.
ENSRNOT00000026935 Rattus norvegicus protocadherin gamma C3 mRNA, partial cds; AF177690.
ENSRNOT00000026947
ENSRNOT00000060450 Rattus norvegicus protocadherin gamma C3 mRNA, partial cds; AF177690.

Other ASV
ID Cell type Tissue type Development stage Sex Definition
AB004276 Rat mRNA for protocadherin 4, complete cds.
AY574019 Rattus norvegicus protocadherin gamma a8 (Pcdhga8) mRNA, complete cds.
NM_001037140 Rattus norvegicus protocadherin gamma a1 (Pcdhga1), mRNA.
NM_001037153 Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.
NM_001037337 Rattus norvegicus protocadherin gamma subfamily A, 12 (Pcdhga12), mRNA.
NM_001037139 Rattus norvegicus protocadherin gamma a2 (Pcdhga2), mRNA.
NM_001037154 Rattus norvegicus protocadherin gamma subfamily A, 3 (Pcdhga3), mRNA.
NM_001037137 Rattus norvegicus protocadherin gamma subfamily A, 5 (Pcdhga5), mRNA.
NM_001014773 Rattus norvegicus protocadherin gamma subfamily A, 7 (Pcdhga7), mRNA.
NM_001037158 Rattus norvegicus protocadherin gamma subfamily A, 9 (Pcdhga9), mRNA.
NM_001037159 Rattus norvegicus protocadherin gamma subfamily B, 5 (Pcdhgb5), mRNA.
NM_053943 Rattus norvegicus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.
NM_001012215 Rattus norvegicus protocadherin gamma b7 (Pcdhgb7), mRNA.

RefSeq
ID Definition
NM_001037156 Rattus norvegicus protocadherin gamma subfamily A, 8 (Pcdhga8), mRNA.
NM_001037135 Rattus norvegicus protocadherin gamma subfamily A, 10 (Pcdhga10), mRNA.
XM_001057332 PREDICTED: Rattus norvegicus similar to protocadherin gamma subfamily B, 6 (LOC680470), mRNA.
NM_001037140 Rattus norvegicus protocadherin gamma a1 (Pcdhga1), mRNA.
NM_001037153 Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.
NM_001037337 Rattus norvegicus protocadherin gamma subfamily A, 12 (Pcdhga12), mRNA.
NM_001037139 Rattus norvegicus protocadherin gamma a2 (Pcdhga2), mRNA.
NM_001037154 Rattus norvegicus protocadherin gamma subfamily A, 3 (Pcdhga3), mRNA.
NM_001037137 Rattus norvegicus protocadherin gamma subfamily A, 5 (Pcdhga5), mRNA.
NM_001014773 Rattus norvegicus protocadherin gamma subfamily A, 7 (Pcdhga7), mRNA.
NM_001037158 Rattus norvegicus protocadherin gamma subfamily A, 9 (Pcdhga9), mRNA.
NM_001037159 Rattus norvegicus protocadherin gamma subfamily B, 5 (Pcdhgb5), mRNA.
NM_053943 Rattus norvegicus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.
NM_001012215 Rattus norvegicus protocadherin gamma b7 (Pcdhgb7), mRNA.

Ensembl
ID Definition
ENSRNOT00000026967
ENSRNOT00000026969 Rattus norvegicus protocadherin-6 (pcdh6) mRNA, partial cds; AF177692.
ENSRNOT00000026985
ENSRNOT00000027009
ENSRNOT00000027015
ENSRNOT00000027026
ENSRNOT00000043154
ENSRNOT00000044434 Rattus norvegicus protocadherin-T2 (pcdh-T2) mRNA, partial cds; AF177694.
ENSRNOT00000060461 Rattus norvegicus protocadherin gamma b7, mRNA (cDNA clone MGC:94552 IMAGE:7189313), complete cds; BC087084.
ENSRNOT00000060466
ENSRNOT00000060472
ENSRNOT00000060475
ENSRNOT00000026935 Rattus norvegicus protocadherin gamma C3 mRNA, partial cds; AF177690.
ENSRNOT00000026947
ENSRNOT00000060450 Rattus norvegicus protocadherin gamma C3 mRNA, partial cds; AF177690.
 
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