Materials and Methods
Resources
- Human: Transcript (Full-length cDNA): Sequnece providers, (mRNA): H-InvDB 7.5 (DDBJ 78), Genome: UCSC hg19, SNP: dbSNP 130
- Mouse: Transcript (Full-length cDNA): Sequnece providers, (mRNA): H-InvDB 6.2 (DDBJ 73), Genome: UCSC mm9
- Rat: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC rn4
- Chimpanzee: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC pt2
- Macaque: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC rm2
- Dog: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC cf2
Mapping and clustering pipelines (Information from H-InvDB)
ORF prediction (Information from H-InvDB)
Truncated transcript decision
Representative AS variant (RASV) decision
Genomic comparison analysis of RASVs between human and other species