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Materials and Methods

Resources

  • Human: Transcript (Full-length cDNA): Sequnece providers, (mRNA): H-InvDB 7.5 (DDBJ 78), Genome: UCSC hg19, SNP: dbSNP 130
  • Mouse: Transcript (Full-length cDNA): Sequnece providers, (mRNA): H-InvDB 6.2 (DDBJ 73), Genome: UCSC mm9
  • Rat: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC rn4
  • Chimpanzee: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC pt2
  • Macaque: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC rm2
  • Dog: Transcript (RNA): H-InvDB 5.3 (DDBJ 69) + RefSeq 23 + Ensembl 44, Genome: UCSC cf2

Mapping and clustering pipelines (Information from H-InvDB)

ORF prediction (Information from H-InvDB)

Truncated transcript decision

Representative AS variant (RASV) decision

Genomic comparison analysis of RASVs between human and other species