H-InvDB x AHG DB
H-InvDB x AHG DB
H-InvDB_9.0 released on May 27, 2015.
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Presentations of H-InvDB

Presentations of H-InvDB at international conferences.

The 31st Annual Meeting of the Molecular Biology Society of JAPAN, The 81st Annual Meeting of the Japanese Biochemical Society (BMB2008)

(9th- 12th December, 2008 at Kobe Port Islanda)
http://www.aeplan.co.jp/bmb2008/en/
1 oral, 10 poster presentations
1P-1290 Comparative Genome analyses of tissue-specific genes. Akiko Noda, et al
4P-1004 MEDALS: Ministry of Economy, Trade and Industry database portal for life science. Akihiro Matsuya, et al
4P-1005 Development of Hyperlink Management System and ID Converter System for a sustainable integration of biological databases. Hajime Nakaoka, et al
4P-1006 PubMed search system using multiple papers as a query. Katsuhiko Murakami, et al
4P-1007 H-InvDB release 5, A database of integrative annotation of human genes and transcripts. Chisato Yamasaki, et al
4P-1008 SuperTACT: An automated analysis pipeline for comprehensive annotation of transcriptome. Fusano Todokoro, et al
4P-1009 Annotation of human genes located on the sequence gaps of the human genome. Yoshiharu Sato, et al
4P-1010 H-DBAS: Human-transcriptome DataBase for Alternative Splicing. Jun-Ichi Takeda, et al
4P-1011 Evola: Evolutionary annotation database of whole human transcriptome. Ryuichi Sakate, et al
4P-1012(4T9-2) A comprehensive survey of nonsense polymorphisms in human genes. Yumi Yamaguchi-Kabata1, Tadashi Imanishi, et al

BioJapan2008, World Business Forum

(October 15-17, Yokohama, Japan)
http://expo.nikkeibp.co.jp/biojapan/eng/
# demonstration at JBiC booth

3rd Metabolome Symposium

(October 30 to November 1, 2008, Yamagata, Japan)
http://www.iab.keio.ac.jp/metabolome2008/
H-InvDB release 5, A database of integrative annotation of human genes and transcripts. Chisato Yamasaki, et al

JBiC symposium

(October 31, 2008. Tokyo, Japan)
http://regist.exponavi.com/jbic2008/
# oral and poster presentations

The 30th Annual Meeting of the Molecular Biology Society of JAPAN, The 80th Annual Meeting of the Japanese Biochemical Society (BMB2007)

(11th - 15th December, 2007 at Pacifico Yokohama)
http://www.aeplan.co.jp/bmb2007/
2 oral, 7 poster presentation and H-InvDB demo at JBIC booth
1P-1062(1T12-8)"H-InvDB release 4: Database of Integrative Annotation of the Human Genes and Transcripts" Yamasaki C.et al
1P-1063"Evola:Orthologous genes database between H-InvDB humans and model organisms based on molecular phylogenetic tree annotations" Matsuya A. et al
1P-1064"G-compass: Comparative genome browser between human and model organisms" Kawahara Y. et al
1P-1065"VaryGene: A new satellite database of H-InvDB for human polymorphisms on all mRNAs" Shimada MK. et al
1P-1066(1T12-9)"Comparative genomics of alternative splicing using human and mouse full-length cDNAs" Takeda J.et al
1P-1067"The two classes of human promoters with locally co-occurring motifs revealed by a novel visualization method" Murakami K. et al
1P-1068"Statistical selection of protein domains which are associated with protein-protein interactions" Nishikata K. et al

HUPO 6th Annual World Congress, Seoul 2007 (HUPO 2007)

(October 6 to 10, 2007, Seoul, Korea)
http://www.hupo2007.com/
"Integration and Analysis of Human Protein-Protein Interactions on H-Invitational Human Transcriptome Database"
Shingo Kikugawa et al.

57th Annual Meeting of the American society of Human Genetics (ASHG 2007)

(October 23 to 27, 2007, San Diego, CA, USA)
http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml
"VaryGene, a new satellite database of annotated human polymorphism in the integrated human transcriptome database H-InvDB"
Makoto K. Shimada et al.

2nd International Biocuration Meeting

(October 25 to 28, 2007, San Jose, CA, USA)
http://tesuque.stanford.edu/biocurator.org/Mtg2007/index.html
"Annotation of human genes and alternative splicing variants in H-InvDB release 4."
Tadashi Imanishi
"SuperTACT: comprehensive automated annotation pipeline of H-InvDB"
Chisato Yamasaki et al.

21st International Mammalian Genome Conference (IMGC2007)

(October 28 to November 1, 2007, Kyoto, Japan)
http://www.imgc2007.com/
"Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees"
Ryuichi Sakate et al.

The 79th Annual Meeting of the Genetics of Japan

(September 19-21, 2007, Okayama, Japan.)
http://www.okayama-u.ac.jp/user/iden79/
"Identification of polymorphic microsatellites on all human genes and their effects on human proteome"
Sanbonmatsu et al
"Investigation of human-specific duplicate genes in H-InvDB Evola"
Sakate et al

BioJapan 2007 - World Business Forum

(September 19 - 21, Yokohama, Japan.)
http://expo.nikkeibp.co.jp/biojapan/eng/index.html
H-InvDB database demonstration at JBIC booth.

Society of Evolutionary Studies Japan, Annual meeting 2007

(August 31- September 2, 2007, Kyoto, Japan.)
http://zoo.zool.kyoto-u.ac.jp/zsys/sesj09/index.html
"Natural selection of genes through genome-wide analysis"
Imanishi, Kawahara et al
"Investigation of polymorphisms of whole human transcriptome which affects the alternative splice variants."
Hayakawa et al
"Integrated annotation of the rice genome"
Yamasaki et al
"Evolutionary studies of human tissue-specific genes"
Noda et al
"Ortholog detection of all human genes in H-InvDB Evola"
Sakate et al

9th RNA meeting (RNA2007 NAGOYA)

(July 28-31, 2007, Nagoya, JAPAN.)
http://wwwsoc.nii.ac.jp/rnaj/RNA2007/
"Detection and annotation of novel functional ncRNA candidates in the human transcripts of H-InvDB"
Harada E. et al.

ISMB & ECCB 2007

- 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB) -
(July 21-25, 2007, Vienna, Austria.)
http://www.iscb.org/ismbeccb2007/
"Detection and annotation of novel functional ncRNA candidates in the human transcripts of H-InvDB"
Imanishi T. et al.
Database demonstration "H-Invitational Database (H-InvDB), an integrated database of human genes and transcripts."

HUGO's 12th Human Genome Meeting, HGM2007.

(May 21-24, 2007 at Montreal Canada.)
http://hgm2007.hugo-international.org/
"Extended annotation for the integrated database of human transcriptome, H-InvDB"
Chisato Yamasaki*, Katsuhiko Murakami, Yasuyuki Fujii, Junichi Takeda, Erimi Harada, Yoshiharu Sato, Ryuichi Sakate, Takayuki Taniya, Shingo Kikugawa, Teruyoshi Hishiki, Tadashi Imanishi and Takashi Gojobori

2006

The 17th International Conference on Genome Informatics (GIW2006)

(December 18-20, 2006. Yokohama, Japan)
http://giw.ims.u-tokyo.ac.jp/giw2006/
"TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB"
Chisato Yamasaki, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu*, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori and Tadashi Imanishi

MBSJ2006 Forum : Molecular Biology - the Next Decade

(December 6-8, 2006. Nagoya, Japan)
http://www.aeplan.co.jp/mbsj2006forum/english/index.html

Database demonstrations at MBSJ2006 Forum (December 6-8, 2006) (in Japanese)
1P-047 "H-InvDB release 3: Database of Integrative Annotation of the Human Genes and Transcripts"
Tadashi Imanishi*, Chisato Yamasaki, Katsuhiko Murakami, Yasuyuki Fujii, Yoshiharu Sato, Motohiko Tanino, Ryuichi Sakate, Takayuki Taniya, Teruyoshi Hishiki, Yumi Yamaguchi-Kabata and Takashi Gojobori
1P-048 "TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB"
Chisato Yamasaki*, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori and Tadashi Imanishi
1P-051 "Evola: The Database of molecular evolutionary analyses about all human genes"
Akihiro Matsuya*, Ryuichi Sakate, Yoshiharu Sato, Yoshihiro Kawahara, Yasuyuki Fujii, Jun-ichi Takeda, Naomi Saichi, Ryoko Sanbonmatsu, Mami Suzuki, Masayuki Tanaka, Katsuhiko Murakami, Akiko Noda, Satoshi Oota, Toshinori Endo, Tadashi Imanishi, Takashi Gojobori and Takeshi Itoh

The Second Automated Function Prediction Meeting(AFP2006)

(August 30 - September 1, 2006 at San Diego, USA)
http://biofunctionprediction.org/afp06/
"TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB"
Chisato Yamasaki*, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori and Tadashi Imanishi

11th International Congress of Human Genetics

(August 6 - 10, 2006 at Brisbane, Australia)
http://www.ichg2006.com/
"Recent Advancement of H-Invitational Database, An Integrated Database of the Human Transcriptome"
Tadashi Imanishi*, Chisato Yamasaki, Katsuhiko Murakami, Yasuyuki Fujii, Yoshiharu Sato, Motohiko Tanino, Ryuichi Sakate, Takayuki Taniya, Yumi Yamaguchi-Kabata and Takashi Gojobori

20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress

[Sunday, June 18 - Friday, June 23, 2006 at Kyoto, Japan.] http://www.congre.co.jp/iubmb/
"Recent Advancement of H-Invitational Database, An Integrated Database of the Human Transcriptome"
Chisato Yamasaki*, Katsuhiko Murakami, Yasuyuki Fujii, Motohiko Tanino, Ryuichi Sakate, Takayuki Taniya, Yumi Yamaguchi-Kabata, Takeshi Itoh, Tadashi Imanishi, Takashi Gojobori and H-Invitational Consortium

HUGO's 11th Human Genome Meeting, HGM2006.

[Wed 31 May to Sat 03 June 2006 at Helsinki, Finland] http://hgm2006.hugo-international.org/
"Recent Advancement of H-Invitational Database, An Integrated Database of the Human Transcriptome"
Tadashi Imanishi*, Chisato Yamasaki, Katsuhiko Murakami, Yasuyuki Fujii, Yoshiharu Sato, Motohiko Tanino, Ryuichi Sakate, Takayuki Taniya, Yumi Yamaguchi-Kabata and Takashi Gojobori
"TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB"
Chisato Yamasaki*, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori and Tadashi Imanishi
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