H-InvDB x AHG DB
H-InvDB x AHG DB
H-InvDB_9.0 released on May 27, 2015.
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Publication of H-Invitational project

The main paper:

  1. H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. Takeda J, et al. (2013) Nucleic Acids Research Jan;41(Database issue):D915-9.
  2. H-InvDB in 2009: extended database and data mining resources for human genes and transcripts. Yamasaki C, et al. (2010) Nucleic Acids Research Jan;38(Database issue):D626-32.
  3. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Yamasaki C, et al. (2008) Nucleic Acids Research 36, Database issue D793-D799.
  4. Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. T. Imanishi et al. (2004) PLoS Biology 2 (6), 856-875.

Related papers:

  1. Full Length Transcriptome-Based H-InvDB Throws A New Light on Chromosome-Centric Proteomics. Imanishi T, et al. (2013) Journal of Proteome Research 12: 62-6.
  2. PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset. Kikugawa T, et al. (2012) BMC Systems Biology 6 Suppl 2:S7: S7
  3. VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts. Shimada MK, et al. (2008) Nucleic Acids Research 37(Database issue):D810-5
  4. Distribution and effects of nonsense polymorphisms in human genes. Yamaguchi-Kabata Y, et al. (2008) PLOS One 2008;3(10):e3393
  5. Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs. Takeda J, et al. (2008) Nucleic Acids Research 2008 Nov;36(20):6386-95.
  6. Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nakagawa S, et al. (2008) Nucleic Acids Research
  7. Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. Matsuya A, et al. (2008) Nucleic Acids Research 36, Database issue D787-D792.
  8. Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome. Sakate R, et al. (2007) Gene 399(1): 1-10.
  9. Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes. Sakai H, et al. (2007) Gene 389(2) 196-203.
  10. H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Takeda, J. et al. (2007) Nucleic Acids Research 35, Database issue D104-D109.
  11. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs. Takeda, J. et al. (2006) Nucleic Acids Research 34 (14), 3917-3928.
  12. Alternative splicing in human transcriptome: Functional and structural influence on proteins. Yura, K. et al. (2006) Gene 380 (2), 63-71.
  13. TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB, Yamasaki C. et al. (2006) Nucleic Acids Research 34 Web Server issue W345-W349.
  14. Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational Database (H-InvDB). Yamasaki C. et al. (2005) Gene 364, 99-107.
  15. A web tool for comparative genomics: G-compass. Fujii Y. et al.(2005) Gene 364, 45-52.
  16. Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system. Koyanagi K.O. et al. (2005) Gene 353 (2), 169-176.
  17. Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals M. Nakao et al. (2005) Nucleic Acids Research 33 (8), 2355-2363.
  18. The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. M. Tanino et al. (2005) Nucleic Acids Research 33 Database issue, D567-D572.