bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
B.taurus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
BC142165
Representative transcript
genome : 61,804,286 - 61,805,784 (1,499)
query : 1 - 1,494 (1,494/1,583)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
XM_611689
genome : 61,804,278 - 61,839,760 (35,483)
query : 5 - 6,594 (6,590/6,594)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSBTAT00000015881
genome : 61,806,596 - 61,890,211 (83,616)
query : 1 - 4,318 (4,318/4,318)
25 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.978)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_588297
Representative transcript
genome : 61,864,638 - 61,935,680 (71,043)
query : 1 - 5,288 (5,288/5,288)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000386831
Pan
sp. (Chimpanzee) : XM_001162731
Pongo
sp. (Orangutan) : ENSPPYT00000000508
Macaca
sp. (Macaque) : XM_001114169
Canis
sp. (Dog) : AF236864
Equus
sp. (Horse) : AY082802
Monodelphis
sp. (Opossum) : XM_001375331
Gallus
sp. (Chicken) : AY574982
Danio
sp. (Zebrafish) : XM_001333993
ENSBTAT00000001050
genome : 61,864,638 - 61,933,962 (69,325)
query : 1 - 3,570 (3,570/3,570)
23 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.987;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC120344
Representative transcript
genome : 61,941,195 - 62,077,674 (136,480)
query : 1 - 2,073 (2,073/2,100)
11 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000076350
Pan
sp. (Chimpanzee) : XM_001162779
Pongo
sp. (Orangutan) : CR858625
Macaca
sp. (Macaque) : XM_001109387
Mus
sp. (Mouse) : AK084041
Rattus
sp. (Rat) : DQ022370
Canis
sp. (Dog) : XM_848110
Equus
sp. (Horse) : ENSECAT00000025805
Monodelphis
sp. (Opossum) : XM_001366550
Gallus
sp. (Chicken) : XM_001234669
Danio
sp. (Zebrafish) : BC059430
Oryzias
sp. (Medaka) : ENSORLT00000009376
Tetraodon
sp. (Tetraodon) : GSTENT00005577001
NM_001075486
genome : 61,941,195 - 62,077,674 (136,480)
query : 1 - 2,073 (2,073/2,100)
11 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSBTAT00000001052
genome : 61,941,196 - 62,077,674 (136,479)
query : 1 - 2,073 (2,073/2,073)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSBTAT00000033964
Representative transcript
genome : 62,198,706 - 62,237,482 (38,777)
query : 23 - 3,603 (3,581/3,603)
22 exons
identity = 0.999
5'(0.923)3'
coverage = 0.994
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000259080
Pan
sp. (Chimpanzee) : XM_514048
Pongo
sp. (Orangutan) : ENSPPYT00000000505
Macaca
sp. (Macaque) : AB173402
Mus
sp. (Mouse) : BC086651
Rattus
sp. (Rat) : XM_001071081
Canis
sp. (Dog) : XM_537157
Equus
sp. (Horse) : XM_001489634
Monodelphis
sp. (Opossum) : XM_001375414
Gallus
sp. (Chicken) : BX950730
Danio
sp. (Zebrafish) : NM_001045083
Oryzias
sp. (Medaka) : ENSORLT00000009174
Tetraodon
sp. (Tetraodon) : GSTENT00003943001
AAFC03119193
61800001-61821558 W -
699
61821559-61822257 N
AAFC03003172
61822258-61847068 W +
50
61847069-61847118 N
AAFC03003169
61847119-61855467 W -
50
61855468-61855517 N
AAFC03003170
61855518-61868646 W +
AAFC03051281
61868647-61873251 W +
50
61873252-61873301 N
AAFC03051282
61873302-62038868 W -
AAFC03012465
62038869-62077199 W +
AAFC03008532
62077200-62082039 W +
50
62082040-62082089 N
AAFC03008527
62082090-62092149 W +
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62092150-62092199 N
AAFC03008534
62092200-62096711 W -
AAFC03008531
62096712-62099624 W -
AAFC03012468
62099625-62102481 W +
AAFC03008530
62102482-62106803 W +
AAFC03012466
62106804-62113202 W +
50
62113203-62113252 N
AAFC03008533
62113253-62122169 W -
50
62122170-62122219 N
AAFC03012467
62122220-62136639 W +
217
62136640-62136856 N
AAFC03012469
62136857-62139413 W -
500
62139414-62139913 N
AAFC03008536
62139914-62141797 W +
50
62141798-62141847 N
AAFC03008528
62141848-62156454 W -
AAFC03008526
62156455-62194281 W +
50
62194282-62194331 N
AAFC03008529
62194332-62198728 W -
AAFC03116540
62198729-62200000 W -