bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSCAFT00000025541
genome : 41,477,998 - 41,513,108 (35,111)
query : 1 - 3,379 (3,379/3,379)
22 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000025552
genome : 41,477,998 - 41,489,210 (11,213)
query : 1 - 630 (630/630)
5 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_547506
genome : 41,478,004 - 41,513,415 (35,412)
query : 1 - 3,671 (3,671/3,671)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_858683
genome : 41,478,004 - 41,513,415 (35,412)
query : 1 - 3,683 (3,683/3,683)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_858704
Representative transcript
genome : 41,478,004 - 41,513,415 (35,412)
query : 1 - 3,698 (3,698/3,698)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000384784
Pan
sp. (Chimpanzee) : XR_023240
Pongo
sp. (Orangutan) : ENSPPYT00000000176
Macaca
sp. (Macaque) : AB171818
Mus
sp. (Mouse) : AK169326
Rattus
sp. (Rat) : BC085765
Equus
sp. (Horse) : XM_001491457
Bos
sp. (Cow) : D90073
Monodelphis
sp. (Opossum) : ENSMODT00000007685
Gallus
sp. (Chicken) : X52690
Danio
sp. (Zebrafish) : BC100001
Oryzias
sp. (Medaka) : ENSORLT00000017177
Tetraodon
sp. (Tetraodon) : GSTENT00030380001
Takifugu
sp. (Fugu) : SINFRUT00000181211
XM_858728
genome : 41,478,004 - 41,513,415 (35,412)
query : 1 - 3,674 (3,674/3,674)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000033798
Representative transcript
genome : 41,492,617 - 41,492,743 (127)
query : 1 - 127 (127/127)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_849606
Representative transcript
genome : 41,519,269 - 41,618,636 (99,368)
query : 1 - 3,034 (3,034/3,034)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000098082
Pan
sp. (Chimpanzee) : XM_525073
Pongo
sp. (Orangutan) : ENSPPYT00000000177
Macaca
sp. (Macaque) : AB168419
Mus
sp. (Mouse) : AK089989
Rattus
sp. (Rat) : XM_001067807
Equus
sp. (Horse) : XM_001491325
Bos
sp. (Cow) : XR_028331
Monodelphis
sp. (Opossum) : XM_001376905
Gallus
sp. (Chicken) : AJ719426
Danio
sp. (Zebrafish) : BC124703
Danio
sp. (Zebrafish) : XM_001332951
Oryzias
sp. (Medaka) : ENSORLT00000017238
Tetraodon
sp. (Tetraodon) : GSTENT00030381001
Takifugu
sp. (Fugu) : SINFRUT00000144725
ENSCAFT00000038412
genome : 41,545,283 - 41,618,012 (72,730)
query : 1 - 2,332 (2,332/2,332)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000025555
genome : 41,545,286 - 41,617,312 (72,027)
query : 1 - 1,524 (1,524/1,524)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_537231
Representative transcript
genome : 41,632,319 - 41,634,229 (1,911)
query : 1 - 1,911 (1,911/1,911)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_858768
genome : 41,632,319 - 41,634,199 (1,881)
query : 16 - 1,896 (1,881/1,896)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.992
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000025558
genome : 41,632,499 - 41,634,229 (1,731)
query : 1 - 1,731 (1,731/1,731)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_849612
Representative transcript
genome : 41,637,073 - 41,702,082 (65,010)
query : 1 - 2,177 (2,177/2,177)
10 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000059351
Pan
sp. (Chimpanzee) : XM_001140558
Macaca
sp. (Macaque) : XM_001091471
Mus
sp. (Mouse) : AK030371
Rattus
sp. (Rat) : AY336075
Equus
sp. (Horse) : XM_001491159
Monodelphis
sp. (Opossum) : XM_001368230
Gallus
sp. (Chicken) : AJ720620
Danio
sp. (Zebrafish) : BC134170
Danio
sp. (Zebrafish) : BC054676
Oryzias
sp. (Medaka) : ENSORLT00000017278
Tetraodon
sp. (Tetraodon) : GSTENT00030383001
Takifugu
sp. (Fugu) : SINFRUT00000144740
contig_26214
41488952-41538393 W +
1122
41538394-41539515 N
contig_26215
41539516-41565788 W +
1
41565789-41565789 N
contig_26216
41565790-41623564 W +
2566
41623565-41626130 N
contig_26217
41626131-41631101 W +
53
41631102-41631154 N
contig_26218
41631155-41648951 W +