bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
AF108655
Representative transcript
genome : 3,671,449 - 4,064,222 (392,774)
query : 1 - 2,383 (2,383/2,402)
14 exons
identity = 0.991
5'(1.000;1.000;0.987;0.976;1.000;0.986;0.982;
0.962;1.000;1.000;0.982;0.938;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000191128
Pan
sp. (Chimpanzee) : XM_507840
Pongo
sp. (Orangutan) : CR861454
Macaca
sp. (Macaque) : AB171003
Mus
sp. (Mouse) : AK167902
Rattus
sp. (Rat) : BC061759
Canis
sp. (Dog) : XM_856497
Equus
sp. (Horse) : XM_001503764
Bos
sp. (Cow) : BC105409
Monodelphis
sp. (Opossum) : XM_001365272
Gallus
sp. (Chicken) : AF108656
Oryzias
sp. (Medaka) : ENSORLT00000014344
Tetraodon
sp. (Tetraodon) : CR686651
Takifugu
sp. (Fugu) : SINFRUT00000178536
NM_131883
genome : 3,671,449 - 4,064,222 (392,774)
query : 1 - 2,383 (2,383/2,402)
14 exons
identity = 0.991
5'(1.000;1.000;0.987;0.976;1.000;0.986;0.982;
0.962;1.000;1.000;0.982;0.938;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000045069
genome : 3,671,449 - 4,064,222 (392,774)
query : 1 - 2,380 (2,380/2,380)
14 exons
identity = 0.991
5'(1.000;1.000;1.000;0.921;1.000;1.000;1.000;
0.962;1.000;1.000;0.994;0.938;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC056717
genome : 3,671,459 - 4,064,222 (392,764)
query : 1 - 2,368 (2,368/2,430)
14 exons
identity = 0.992
5'(0.991;1.000;0.987;1.000;0.989;0.979;0.982;
1.000;1.000;0.994;0.988;0.938;0.991;0.996)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC063994
genome : 3,671,461 - 4,064,222 (392,762)
query : 1 - 2,365 (2,365/2,390)
14 exons
identity = 0.995
5'(1.000;1.000;0.987;0.992;1.000;0.986;0.982;
1.000;1.000;1.000;0.994;0.938;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000056295
genome : 3,671,461 - 4,064,222 (392,762)
query : 1 - 2,365 (2,365/2,365)
14 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;0.938;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AF276996
genome : 3,671,465 - 4,064,223 (392,759)
query : 1 - 2,361 (2,361/2,391)
14 exons
identity = 0.992
5'(1.000;1.000;0.973;0.984;1.000;0.986;0.982;
1.000;1.000;1.000;0.994;0.938;0.991;0.995)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000092515
genome : 3,673,744 - 3,684,099 (10,356)
query : 1 - 531 (531/531)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001918626
Representative transcript
genome : 3,673,776 - 3,762,201 (88,426)
query : 1 - 1,370 (1,370/1,370)
10 exons
identity = 0.995
3'(1.000;1.000;1.000;1.000;1.000;0.875;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000080345
Representative transcript
genome : 3,684,441 - 3,684,790 (350)
query : 1 - 261 (261/261)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC124705
Representative transcript
genome : 3,785,080 - 3,915,765 (130,686)
query : 1 - 1,873 (1,873/1,898)
9 exons
identity = 0.994
5'(1.000;1.000;1.000;0.988;1.000;0.994;1.000;
1.000;0.990)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000042076
Pan
sp. (Chimpanzee) : ENSPTRT00000042899
Pongo
sp. (Orangutan) : ENSPPYT00000002823
Macaca
sp. (Macaque) : XM_001104618
Mus
sp. (Mouse) : AK144727
Rattus
sp. (Rat) : XM_215428
Canis
sp. (Dog) : XM_546160
Equus
sp. (Horse) : ENSECAT00000006365
Bos
sp. (Cow) : XM_616796
Monodelphis
sp. (Opossum) : XM_001363387
Gallus
sp. (Chicken) : ENSGALT00000006946
Oryzias
sp. (Medaka) : ENSORLT00000014273
Tetraodon
sp. (Tetraodon) : CR722314
Takifugu
sp. (Fugu) : SINFRUT00000168684
NM_001077325
genome : 3,785,080 - 3,915,765 (130,686)
query : 1 - 1,873 (1,873/1,898)
9 exons
identity = 0.994
5'(1.000;1.000;1.000;0.988;1.000;0.994;1.000;
1.000;0.990)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000058621
genome : 3,785,080 - 3,915,789 (130,710)
query : 1 - 1,897 (1,897/1,897)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001921869
Representative transcript
genome : 3,933,181 - 3,940,563 (7,383)
query : 1 - 959 (959/960)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.982)3'
coverage = 0.999
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000021290
Pan
sp. (Chimpanzee) : XM_001138842
Pongo
sp. (Orangutan) : ENSPPYT00000002822
Macaca
sp. (Macaque) : XM_001104470
Mus
sp. (Mouse) : AK040570
Canis
sp. (Dog) : XM_546162
Equus
sp. (Horse) : XM_001503805
Bos
sp. (Cow) : BC114018
Monodelphis
sp. (Opossum) : XM_001363465
Gallus
sp. (Chicken) : CR354362
Oryzias
sp. (Medaka) : ENSORLT00000014265
ENSDART00000058616
genome : 3,933,235 - 3,940,565 (7,331)
query : 1 - 909 (909/909)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000092521
Representative transcript
genome : 3,980,846 - 4,003,827 (22,982)
query : 1 - 897 (897/897)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000102618
genome : 4,048,799 - 4,063,492 (14,694)
query : 1 - 1,572 (1,572/1,572)
13 exons
identity = 0.982
5'(1.000;1.000;0.945;0.979;1.000;1.000;0.962;
1.000;0.983;0.982;0.938;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC124086
Representative transcript
genome : 4,066,457 - 4,099,753 (33,297)
query : 1 - 2,144 (2,144/2,163)
16 exons
identity = 0.994
3'(0.997;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000039186
Pan
sp. (Chimpanzee) : XM_526633
Pongo
sp. (Orangutan) : ENSPPYT00000017340
Macaca
sp. (Macaque) : AY841878
Mus
sp. (Mouse) : AK051880
Mus
sp. (Mouse) : BC053730
Rattus
sp. (Rat) : BC081692
Rattus
sp. (Rat) : BC098896
Canis
sp. (Dog) : DQ222459
Equus
sp. (Horse) : DQ825759
Bos
sp. (Cow) : BT030709
Monodelphis
sp. (Opossum) : XM_001370385
Gallus
sp. (Chicken) : XM_421638
Danio
sp. (Zebrafish) : BC115277
Danio
sp. (Zebrafish) : DQ223861
Oryzias
sp. (Medaka) : ENSORLT00000003412
Oryzias
sp. (Medaka) : ENSORLT00000008770
Tetraodon
sp. (Tetraodon) : GSTENT00020877001
Takifugu
sp. (Fugu) : SINFRUT00000174804
Takifugu
sp. (Fugu) : SINFRUT00000176523
NM_001039639
genome : 4,066,457 - 4,099,753 (33,297)
query : 1 - 2,144 (2,144/2,163)
16 exons
identity = 0.994
3'(0.997;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000032322
genome : 4,066,456 - 4,099,753 (33,298)
query : 1 - 2,145 (2,145/2,145)
16 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
DQ223860
genome : 4,066,619 - 4,097,575 (30,957)
query : 1 - 1,927 (1,927/1,930)
15 exons
identity = 0.995
3'(0.982;1.000)5'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000091806
genome : 4,066,863 - 4,097,500 (30,638)
query : 1 - 1,734 (1,734/1,734)
15 exons
identity = 0.979
3'(0.851)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold1254
3667835-4067834 W +