bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
D.rerio
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XR_044932
genome : 5,325,904 - 5,335,711 (9,808)
query : 1 - 873 (873/873)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
BC085602
Representative transcript
genome : 5,325,919 - 5,335,910 (9,992)
query : 1 - 1,049 (1,049/1,072)
10 exons
identity = 0.987
5'(0.964;0.964;0.982;1.000;0.987)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000027160
Pan
sp. (Chimpanzee) : XM_514184
Pongo
sp. (Orangutan) : ENSPPYT00000000256
Macaca
sp. (Macaque) : XM_001106148
Mus
sp. (Mouse) : BC061248
Rattus
sp. (Rat) : XM_001066750
Canis
sp. (Dog) : XM_547404
Equus
sp. (Horse) : ENSECAT00000008623
Bos
sp. (Cow) : BC126724
Monodelphis
sp. (Opossum) : ENSMODT00000003830
Gallus
sp. (Chicken) : CR353330
Danio
sp. (Zebrafish) : BC095191
Oryzias
sp. (Medaka) : ENSORLT00000011052
Tetraodon
sp. (Tetraodon) : CR678242
Takifugu
sp. (Fugu) : SINFRUT00000143817
ENSDART00000064694
genome : 5,325,919 - 5,335,926 (10,008)
query : 1 - 1,076 (1,076/1,076)
10 exons
identity = 0.995
5'(1.000;0.915;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000105363
genome : 5,325,919 - 5,335,672 (9,754)
query : 1 - 819 (819/819)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_693745
Representative transcript
genome : 5,340,763 - 5,361,545 (20,783)
query : 1 - 2,585 (2,585/2,585)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000032262
Pan
sp. (Chimpanzee) : XM_514248
Pongo
sp. (Orangutan) : ENSPPYT00000000170
Macaca
sp. (Macaque) : XM_001089241
Mus
sp. (Mouse) : AK014605
Rattus
sp. (Rat) : BC091388
Canis
sp. (Dog) : XM_537230
Equus
sp. (Horse) : XM_001491544
Bos
sp. (Cow) : BC114164
Monodelphis
sp. (Opossum) : ENSMODT00000036706
Gallus
sp. (Chicken) : XM_415040
Danio
sp. (Zebrafish) : BC076083
Oryzias
sp. (Medaka) : ENSORLT00000021446
Takifugu
sp. (Fugu) : SINFRUT00000143815
ENSDART00000049617
genome : 5,343,136 - 5,360,892 (17,757)
query : 1 - 1,422 (1,422/1,422)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC054133
Representative transcript
genome : 5,364,991 - 5,381,723 (16,733)
query : 1 - 1,069 (1,069/1,086)
7 exons
identity = 0.975
3'(0.938;0.974)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000037661
Pan
sp. (Chimpanzee) : XM_001160490
Pongo
sp. (Orangutan) : ENSPPYT00000021734
Macaca
sp. (Macaque) : AB070200
Mus
sp. (Mouse) : AK005749
Rattus
sp. (Rat) : XM_574904
Canis
sp. (Dog) : ENSCAFT00000039543
Equus
sp. (Horse) : ENSECAT00000017253
Bos
sp. (Cow) : BC112612
Monodelphis
sp. (Opossum) : XM_001379094
Gallus
sp. (Chicken) : ENSGALT00000025019
Danio
sp. (Zebrafish) : XM_695291
Tetraodon
sp. (Tetraodon) : GSTENT00035763001
NM_200400
genome : 5,364,991 - 5,381,723 (16,733)
query : 1 - 1,069 (1,069/1,086)
7 exons
identity = 0.975
3'(0.938;0.974)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001331509
genome : 5,364,989 - 5,381,723 (16,735)
query : 1 - 1,086 (1,086/1,086)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSDART00000002778
genome : 5,365,253 - 5,381,723 (16,471)
query : 1 - 825 (825/825)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Zv7_scaffold1680
5331154-5371153 W +