bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0022205
HIT000052632
(
BC041888
)
Representative transcript
(Rab GTPase-activating protein 1-like isoform A.)
genome : 174,128,548 - 174,517,699 (389,152)
query : 1 - 2,605 (2,605/2,620)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006020 : PTB/PI domain
IPR022164 : Kinesin-like
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 13, nucl 12, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000311289 (
ENST00000357444
)
(PTB/PI domain containing protein.)
genome : 174,128,548 - 174,517,699 (389,152)
query : 1 - 2,605 (2,605/2,605)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 13, nucl 12, golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000348969 (
ENST00000367689
)
(PTB/PI domain containing protein.)
genome : 174,128,548 - 174,514,089 (385,542)
query : 1 - 1,988 (1,988/1,988)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14, nucl 12, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000250318
(
AL157958
)
(PTB/PI domain containing protein.)
genome : 174,128,728 - 174,363,283 (234,556)
query : 1 - 1,847 (1,847/1,847)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR006020 : PTB/PI domain
IPR022164 : Kinesin-like
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0005515 : Molecular Function : protein binding
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.5, cyto 9, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000555630 (
ENST00000457696
)
(PTB/PI domain containing protein.)
genome : 174,128,728 - 174,363,283 (234,556)
query : 1 - 1,847 (1,847/1,847)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.5, cyto 9, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000591659 (
ENST00000487987
)
(Conserved hypothetical protein.)
genome : 174,189,850 - 174,200,383 (10,534)
query : 1 - 554 (554/554)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, nucl 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000628631 (
ENST00000529474
)
(PTB/PI domain containing protein.)
genome : 174,200,357 - 174,212,305 (11,949)
query : 1 - 498 (498/498)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 13.5, extr 7, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000076059
(
AF279778
)
(Kinesin-like domain containing protein.)
genome : 174,219,707 - 174,515,038 (295,332)
query : 1 - 1,956 (1,956/1,956)
9 exons
identity = 0.998
5'(1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR022164 : Kinesin-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 16, nucl 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000015189
(
AK074409
)
(Kinesin-like domain containing protein.)
genome : 174,221,652 - 174,515,048 (293,397)
query : 1 - 1,870 (1,870/1,887)
8 exons
identity = 0.994
5'(0.896;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)3'
coverage = 1.000
InterPro :
IPR022164 : Kinesin-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 16, nucl 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000348970 (
ENST00000367690
)
(Kinesin-like domain containing protein.)
genome : 174,244,238 - 174,515,042 (270,805)
query : 1 - 1,808 (1,808/1,808)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000260454
(
BC062541
)
(Rab GTPase-activating protein 1-like isoform A.)
genome : 174,244,253 - 174,515,042 (270,790)
query : 1 - 1,795 (1,795/1,812)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR022164 : Kinesin-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 6, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0203682
HIT000464705_09
(
DQ598174
)
Representative transcript
(Non-protein coding transcript.)
genome : 174,320,018 - 174,320,047 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203682)
HIX0022205
HIT000625467 (
ENST00000526253
)
(Rab-GTPase-TBC domain containing protein.)
genome : 174,334,368 - 174,606,626 (272,259)
query : 1 - 439 (439/439)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0160557
HIT000521880 (
ENST00000423946
)
(Protein of unknown function DUF1346 family protein.)
genome : 174,336,243 - 174,337,177 (935)
query : 1 - 935 (935/935)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 9, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160557)
HIX0028777
HIT000383832
(
AF096784
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,130 - 174,418,399 (1,270)
query : 1 - 1,270 (1,270/1,270)
1 exon
identity = 0.991
5'(0.991)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000335325
(
BC095532
)
Representative transcript
(Probable G-protein coupled receptor 52;)
genome : 174,417,212 - 174,418,683 (1,472)
query : 2 - 1,474 (1,473/1,474)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : ENSDART00000061344
Gallus
sp. (Chicken) : ENSGALT00000033606
Pongo
sp. (Orangutan) : ENSPPYT00000000587
Tetraodon
sp. (Tetraodon) : GSTENT00019267001
Takifugu
sp. (Fugu) : SINFRUT00000163527
Rattus
sp. (Rat) : XM_001069712
Macaca
sp. (Macaque) : XM_001104167
Monodelphis
sp. (Opossum) : XM_001365358
Equus
sp. (Horse) : XM_001497489
Pan
sp. (Chimpanzee) : XM_514013
Mus
sp. (Mouse) : XM_885170
HIX0028777
HIT000202356 (
NM_005684
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,212 - 174,418,683 (1,472)
query : 1 - 1,472 (1,472/1,472)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000348965 (
ENST00000367685
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,212 - 174,418,683 (1,472)
query : 1 - 1,472 (1,472/1,472)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000262614
(
BC067456
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000262615
(
BC067457
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000262616
(
BC067458
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000262617
(
BC067459
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000262618
(
BC067460
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000263611
(
BC069460
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0028777
HIT000653750
(
HQ995526
)
(Probable G-protein coupled receptor 52;)
genome : 174,417,250 - 174,418,335 (1,086)
query : 1 - 1,086 (1,086/1,086)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028777)
HIX0001348
HIT000015013
(
AK074233
)
Representative transcript
(Conserved hypothetical protein.)
genome : 174,442,814 - 174,444,911 (2,098)
query : 1 - 2,098 (2,098/2,120)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 10.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001348)
HIX0022205
HIT000578669 (
ENST00000474375
)
(Rab-GTPase-TBC domain containing protein.)
genome : 174,606,516 - 174,674,714 (68,199)
query : 1 - 832 (832/832)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito 7.5, cyto_nucl 7.5, mito_pero 7.5,
cyto_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000628310 (
ENST00000529145
)
(Rab-GTPase-TBC domain containing protein.)
genome : 174,669,551 - 174,721,492 (51,942)
query : 1 - 520 (520/520)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000038373
(
BC018630
)
(Rab GTPase-activating protein 1-like isoform A.)
genome : 174,671,250 - 174,927,319 (256,070)
query : 1 - 701 (701/718)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0160448
HIT000517963 (
ENST00000420029
)
(Barrier- to-autointegration factor, BAF family protein.)
genome : 174,725,988 - 174,726,257 (270)
query : 1 - 270 (270/270)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 28, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160448)
HIX0022296
HIT000011576
(
AK054962
)
Representative transcript
(Hypothetical short protein.)
genome : 174,786,437 - 174,788,325 (1,889)
query : 1 - 1,755 (1,755/1,755)
2 exons
identity = 0.994
5'(0.997;0.982)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022296)
HIX0178393
HIT000552817 (
ENST00000454883
)
(NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 family protein.)
genome : 174,818,805 - 174,819,306 (502)
query : 1 - 502 (502/502)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 5, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178393)
HIX0022205
HIT000723018 (
NM_001243763
)
(Conserved hypothetical protein.)
genome : 174,843,524 - 174,927,327 (83,804)
query : 1 - 728 (728/740)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000250081
(
AL049701
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,843,596 - 174,927,319 (83,724)
query : 1 - 648 (648/648)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000582548 (
ENST00000478442
)
(Conserved hypothetical protein.)
genome : 174,843,596 - 174,927,319 (83,724)
query : 1 - 648 (648/648)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000366247 (
NM_001035230
)
(Conserved hypothetical protein.)
genome : 174,844,656 - 174,927,327 (82,672)
query : 1 - 803 (803/815)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000035653
(
BC012094
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,844,684 - 174,927,324 (82,641)
query : 1 - 772 (772/789)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000589983 (
ENST00000486220
)
(Conserved hypothetical protein.)
genome : 174,844,684 - 174,927,324 (82,641)
query : 1 - 772 (772/772)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0022205
HIT000250082
(
AL049702
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,846,528 - 174,927,319 (80,792)
query : 1 - 601 (601/601)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022205)
HIX0161286
HIT000546092 (
ENST00000448158
)
(TRAM/LAG1/CLN8 homology domain containing protein.)
genome : 174,861,554 - 174,862,292 (739)
query : 1 - 395 (395/395)
2 exons
identity = 0.992
5'(0.990;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161286)
HIX0160318
HIT000512824 (
ENST00000414890
)
(Conserved hypothetical protein.)
genome : 174,866,095 - 174,867,116 (1,022)
query : 1 - 720 (720/737)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160318)
HIX0161097
HIT000539360 (
ENST00000441426
)
(Ribosomal protein S26e family protein.)
genome : 174,891,244 - 174,891,577 (334)
query : 1 - 334 (334/334)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161097)
HIX0159932
HIT000550376 (
ENST00000452442
)
(Hypothetical short protein.)
genome : 174,904,084 - 174,923,398 (19,315)
query : 1 - 670 (670/670)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159932)
HIX0159932
HIT000546620 (
ENST00000448686
)
(Hypothetical short protein.)
genome : 174,914,660 - 174,918,013 (3,354)
query : 1 - 526 (526/526)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159932)
HIX0213942
HIT000723019 (
NM_001243764
)
(Conserved hypothetical protein.)
genome : 174,933,905 - 174,964,445 (30,541)
query : 1 - 6,248 (6,248/6,266)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, nucl 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0213942
HIT000348968 (
ENST00000367688
)
(Conserved hypothetical protein.)
genome : 174,933,905 - 174,959,622 (25,718)
query : 1 - 1,425 (1,425/1,425)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0213942
HIT000499968
(
AK316355
)
Representative transcript
(Conserved hypothetical protein.)
genome : 174,933,905 - 174,959,622 (25,718)
query : 1 - 1,425 (1,425/1,425)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0213942
HIT000499832
(
AK316219
)
(Conserved hypothetical protein.)
genome : 174,933,937 - 174,959,290 (25,354)
query : 1 - 1,061 (1,061/1,061)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;0.988;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0213942
HIT000493335
(
AK298711
)
(Conserved hypothetical protein.)
genome : 174,933,939 - 174,959,494 (25,556)
query : 1 - 1,263 (1,263/1,263)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0213942
HIT000588937 (
ENST00000485114
)
(Conserved hypothetical protein.)
genome : 174,934,096 - 174,963,017 (28,922)
query : 1 - 537 (537/537)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, nucl 9, extr 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0213942
HIT000566488 (
ENST00000461613
)
(Conserved hypothetical protein.)
genome : 174,945,166 - 174,957,944 (12,779)
query : 1 - 477 (477/477)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 12.5, nucl 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213942)
HIX0029276
HIT000095208
(
BC038430
)
Representative transcript
(Conserved hypothetical protein.)
genome : 174,964,437 - 174,968,496 (4,060)
query : 1 - 4,060 (4,060/4,093)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 14, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029276)
HIX0213977
HIT000524727 (
ENST00000426793
)
(Siah interacting protein, N-terminal domain containing protein.)
genome : 174,968,571 - 174,973,886 (5,316)
query : 1 - 499 (499/499)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 17, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213977)
HIX0213977
HIT000566836 (
ENST00000461977
)
(Siah interacting protein, N-terminal domain containing protein.)
genome : 174,968,607 - 174,974,104 (5,498)
query : 1 - 574 (574/574)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213977)
HIX0213977
HIT000587204 (
ENST00000483307
)
(Siah interacting protein, N-terminal domain containing protein.)
genome : 174,969,081 - 174,974,186 (5,106)
query : 1 - 688 (688/688)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13, nucl 7, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213977)
HIX0213977
HIT000488666
(
AK294042
)
Representative transcript
(Siah interacting protein, N-terminal domain containing protein.)
genome : 174,969,178 - 174,974,541 (5,364)
query : 1 - 946 (946/946)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13, nucl 7, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213977)
HIX0214189
HIT000573707 (
ENST00000469173
)
(HSP20-like chaperone domain containing protein.)
genome : 174,975,719 - 174,978,033 (2,315)
query : 1 - 904 (904/904)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 7, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214189)
HIX0001351
HIT000601481 (
ENST00000498253
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,979,925 - 174,983,960 (4,036)
query : 1 - 539 (539/539)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 12.5, cyto_nucl 9.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000208600 (
NM_022100
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,982,095 - 174,992,591 (10,497)
query : 1 - 2,144 (2,144/2,160)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000659902 (
NR_037606
)
(Conserved hypothetical protein.)
genome : 174,982,095 - 174,992,591 (10,497)
query : 1 - 2,236 (2,236/2,252)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, cyto 3.5, cyto_nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000580566 (
ENST00000476371
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,982,094 - 174,992,561 (10,468)
query : 1 - 2,115 (2,115/2,115)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000250085
(
AL049705
)
Representative transcript
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,983,128 - 174,992,561 (9,434)
query : 1 - 1,081 (1,081/1,081)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001209 : Ribosomal protein S14
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK144195
Bos
sp. (Cow) : AY675077
Danio
sp. (Zebrafish) : BC122369
Gallus
sp. (Chicken) : BX933085
Tetraodon
sp. (Tetraodon) : CR631381
Oryzias
sp. (Medaka) : ENSORLT00000020325
Pongo
sp. (Orangutan) : ENSPPYT00000000580
Takifugu
sp. (Fugu) : SINFRUT00000161261
Rattus
sp. (Rat) : XM_001069236
Macaca
sp. (Macaque) : XM_001104412
Pan
sp. (Chimpanzee) : XM_001152337
Monodelphis
sp. (Opossum) : XM_001365493
Equus
sp. (Horse) : XM_001497781
Canis
sp. (Dog) : XM_537182
HIX0001351
HIT000429781
(
AK310915
)
(Conserved hypothetical protein.)
genome : 174,983,153 - 174,992,561 (9,409)
query : 1 - 1,148 (1,148/1,148)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, cyto 3.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000348957 (
ENST00000367677
)
(Conserved hypothetical protein.)
genome : 174,983,381 - 174,992,551 (9,171)
query : 1 - 910 (910/910)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, cyto 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000034577
(
BC009788
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,983,633 - 174,992,554 (8,922)
query : 4 - 571 (568/598)
3 exons
identity = 0.995
3'(0.992;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR001209 : Ribosomal protein S14
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000430625
(
AK311759
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,983,805 - 174,992,561 (8,757)
query : 1 - 404 (404/404)
3 exons
identity = 0.998
3'(0.995;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001209 : Ribosomal protein S14
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0160089
HIT000444747_03
(
DQ578216
)
Representative transcript
(Non-protein coding transcript.)
genome : 175,013,418 - 175,013,447 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160089)
HIX0178057
HIT000124451 (
ENST00000326105
)
(Conserved hypothetical protein.)
genome : 175,013,762 - 175,014,784 (1,023)
query : 1 - 1,023 (1,023/1,023)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 13.5, cyto 9.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178057)
HIX0178057
HIT000446084_03
(
DQ579553
)
Representative transcript
(Non-protein coding transcript.)
genome : 175,013,910 - 175,013,940 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178057)
HIX0023596
HIT000046917
(
AK127044
)
(Tenascin-N; TN-N; Precursor;)
genome : 175,036,994 - 175,117,202 (80,209)
query : 1 - 5,008 (5,008/5,008)
19 exons
identity = 0.999
5'(1.000;0.998;1.000;0.996;1.000;0.989;1.000;
1.000;1.000;1.000;0.996;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;0.999)3'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR020837 : Fibrinogen, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, E.R. 9.5, E.R._golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
HIX0023596
HIT000104972 (
ENST00000239462
)
(Tenascin-N; TN-N; Precursor;)
genome : 175,036,994 - 175,117,202 (80,209)
query : 1 - 5,008 (5,008/5,008)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, E.R. 9.5, E.R._golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
HIX0023596
HIT000366899 (
NM_022093
)
(Tenascin-N; TN-N; Precursor;)
genome : 175,036,994 - 175,117,202 (80,209)
query : 1 - 5,008 (5,008/5,008)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, E.R. 9.5, E.R._golg 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
HIX0023596
HIT000500629
(
BC136619
)
Representative transcript
(Tenascin-N; TN-N; Precursor;)
genome : 175,046,525 - 175,116,527 (70,003)
query : 1 - 4,250 (4,250/4,250)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR020837 : Fibrinogen, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, E.R. 9.5, E.R._golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AF455756
Gallus
sp. (Chicken) : AM231718
Canis
sp. (Dog) : ENSCAFT00000022816
Equus
sp. (Horse) : ENSECAT00000012232
Macaca
sp. (Macaque) : ENSMMUT00000000791
Monodelphis
sp. (Opossum) : ENSMODT00000038013
Oryzias
sp. (Medaka) : ENSORLT00000020342
Pongo
sp. (Orangutan) : ENSPPYT00000000579
Tetraodon
sp. (Tetraodon) : GSTENT00028391001
Takifugu
sp. (Fugu) : SINFRUT00000166524
Rattus
sp. (Rat) : XM_222794
Pan
sp. (Chimpanzee) : XM_524976
Bos
sp. (Cow) : XM_595602
HIX0023596
HIT000502728
(
BC144305
)
(Tenascin-N precursor.)
genome : 175,046,525 - 175,116,527 (70,003)
query : 1 - 3,719 (3,719/3,719)
17 exons
identity = 0.998
5'(1.000;1.000;0.996;1.000;1.000;1.000;0.989;
1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR013111 : EGF-like domain, extracellular
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR020837 : Fibrinogen, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4.5, E.R._golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
HIX0023596
HIT000250080
(
AL049689
)
(Tenascin-N precursor.)
genome : 175,046,570 - 175,117,072 (70,503)
query : 1 - 4,750 (4,750/4,750)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR020837 : Fibrinogen, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, E.R. 5.5, E.R._golg 4, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
HIX0023596
HIT000047527
(
AK127654
)
(Tenascin-N; TN-N; Precursor;)
genome : 175,087,781 - 175,116,912 (29,132)
query : 4 - 2,138 (2,135/2,138)
9 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
0.994;0.999)3'
coverage = 0.999
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR020837 : Fibrinogen, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023596)
HIX0001352
HIT000562064 (
NM_001162893
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,162,229 (36,107)
query : 1 - 4,721 (4,721/4,721)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000562065 (
NM_001162894
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,162,229 (36,107)
query : 1 - 4,644 (4,644/4,644)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000250094
(
AL049800
)
Representative transcript
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,162,079 (35,957)
query : 1 - 4,494 (4,494/4,494)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK028922
Bos
sp. (Cow) : ENSBTAT00000023528
Gallus
sp. (Chicken) : XM_422276
HIX0001352
HIT000542573 (
ENST00000444639
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,162,079 (35,957)
query : 1 - 4,494 (4,494/4,494)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000204974 (
NM_014656
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,161,949 (35,827)
query : 1 - 4,584 (4,584/4,584)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000562066 (
NM_001162895
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,161,949 (35,827)
query : 1 - 4,510 (4,510/4,510)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000250093
(
AL049799
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,161,929 (35,807)
query : 1 - 4,564 (4,564/4,564)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000521247 (
ENST00000423313
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,161,929 (35,807)
query : 1 - 4,564 (4,564/4,564)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000042186
(
D25539
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,161,833 (35,711)
query : 1 - 4,460 (4,460/4,460)
4 exons
identity = 0.996
3'(0.996;0.994;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000645188 (
ENST00000546143
)
(Conserved hypothetical protein.)
genome : 175,126,123 - 175,135,877 (9,755)
query : 1 - 4,340 (4,340/4,340)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000092617
(
BC032361
)
(Conserved hypothetical protein.)
genome : 175,126,673 - 175,161,867 (35,195)
query : 1 - 3,952 (3,952/4,014)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000339979
(
BC111699
)
(Conserved hypothetical protein.)
genome : 175,127,008 - 175,161,873 (34,866)
query : 1 - 3,540 (3,540/3,540)
3 exons
identity = 0.995
3'(0.995;0.994;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000259116
(
BC050374
)
(Conserved hypothetical protein.)
genome : 175,128,089 - 175,161,890 (33,802)
query : 1 - 2,485 (2,485/2,513)
3 exons
identity = 0.998
3'(0.998;0.989;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000644296 (
ENST00000545251
)
(Conserved hypothetical protein.)
genome : 175,128,089 - 175,161,890 (33,802)
query : 1 - 2,485 (2,485/2,485)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000425488
(
AK292691
)
(Conserved hypothetical protein.)
genome : 175,129,153 - 175,161,946 (32,794)
query : 1 - 1,542 (1,542/1,542)
4 exons
identity = 0.993
3'(0.991;0.994;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000090245
(
BC020789
)
(Conserved hypothetical protein.)
genome : 175,129,954 - 175,161,912 (31,959)
query : 1 - 716 (716/745)
4 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, cyto 10, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000680144 (
ENST00000567124
)
(Hypothetical short protein.)
genome : 175,130,163 - 175,161,911 (31,749)
query : 1 - 581 (581/581)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0001352
HIT000676709 (
ENST00000563563
)
(Hypothetical short protein.)
genome : 175,130,180 - 175,162,135 (31,956)
query : 1 - 570 (570/570)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001352)
HIX0160235
HIT000510291 (
ENST00000412357
)
(Hypothetical short protein.)
genome : 175,172,364 - 175,173,985 (1,622)
query : 1 - 775 (775/775)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, extr 11, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160235)
HIX0160314
HIT000512667 (
ENST00000414733
)
(Ribosomal protein S14 family protein.)
genome : 175,266,216 - 175,266,376 (161)
query : 1 - 161 (161/161)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 9, cyto 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160314)
HIX0214287
HIT000682531 (
ENST00000569593
)
(Hypothetical short protein.)
genome : 175,276,354 - 175,304,595 (28,242)
query : 1 - 847 (847/847)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214287)
HIX0001353
HIT000000226
(
AB007979
)
Representative transcript
(Rho guanine nucleotide exchange factor 40.)
genome : 175,284,333 - 175,289,747 (5,415)
query : 184 - 5,596 (5,413/5,596)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.967
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001353)
HIX0001353
HIT000090473
(
BC021852
)
(Conserved hypothetical protein.)
genome : 175,284,587 - 175,287,024 (2,438)
query : 1 - 2,436 (2,436/2,451)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 12, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001353)
HIX0028854
HIT000348954 (
ENST00000367674
)
(Tenascin-R; TN-R; Janusin; Restrictin; Precursor;)
genome : 175,291,935 - 175,712,906 (420,972)
query : 1 - 5,344 (5,344/5,344)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 9, extr 8, cyto 8, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000108927 (
ENST00000263525
)
(Tenascin-R; TN-R; Janusin; Restrictin; Precursor;)
genome : 175,291,935 - 175,712,752 (420,818)
query : 1 - 5,190 (5,190/5,190)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 9, extr 8, cyto 8, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000200127 (
NM_003285
)
(Tenascin-R; TN-R; Janusin; Restrictin; Precursor;)
genome : 175,291,935 - 175,712,752 (420,818)
query : 1 - 5,190 (5,190/5,190)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 9, extr 8, cyto 8, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000327555
(
Z67996
)
(Tenascin-R; TN-R; Janusin; Restrictin; Precursor;)
genome : 175,291,935 - 175,375,931 (83,997)
query : 1 - 4,716 (4,716/4,716)
21 exons
identity = 0.999
3'(1.000;1.000;0.994;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000;1.000;1.000;0.998;0.997)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR013111 : EGF-like domain, extracellular
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 8, extr 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000325034
(
X98085
)
Representative transcript
(Tenascin-R; TN-R; Janusin; Restrictin; Precursor;)
genome : 175,291,949 - 175,497,458 (205,510)
query : 1 - 4,738 (4,738/4,738)
22 exons
identity = 0.997
3'(0.998;1.000;0.994;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;0.996;1.000;1.000;1.000;0.996;0.995;
0.964)5'
coverage = 1.000
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR013111 : EGF-like domain, extracellular
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 8, extr 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK039390
Danio
sp. (Zebrafish) : AY286489
Canis
sp. (Dog) : ENSCAFT00000022732
Monodelphis
sp. (Opossum) : ENSMODT00000037993
Oryzias
sp. (Medaka) : ENSORLT00000020366
Pongo
sp. (Orangutan) : ENSPPYT00000000577
Takifugu
sp. (Fugu) : SINFRUT00000161279
Gallus
sp. (Chicken) : X64649
Macaca
sp. (Macaque) : XM_001104570
Equus
sp. (Horse) : XM_001498017
Pan
sp. (Chimpanzee) : XM_524977
Bos
sp. (Cow) : XM_604780
Rattus
sp. (Rat) : Z18630
HIX0028854
HIT000389992
(
BC129830
)
(Tenascin-R precursor.)
genome : 175,292,275 - 175,375,717 (83,443)
query : 13 - 4,173 (4,161/4,173)
21 exons
identity = 0.999
3'(1.000;1.000;0.994;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.995)5'
coverage = 0.997
InterPro :
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR003961 : Fibronectin type III
IPR013032 : EGF-like, conserved site
IPR013111 : EGF-like domain, extracellular
IPR014715 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 14, cyto 13, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000520208 (
ENST00000422274
)
(Tenascin-R precursor.)
genome : 175,362,916 - 175,375,500 (12,585)
query : 1 - 529 (529/529)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, extr 7, nucl 6.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000490447
(
AK295823
)
(Tenascin-R precursor.)
genome : 175,365,680 - 175,712,670 (346,991)
query : 2 - 1,610 (1,609/1,625)
5 exons
identity = 0.999
3'(1.000;1.000;0.996;1.000;1.000)5'
coverage = 0.990
InterPro :
IPR013032 : EGF-like, conserved site
IPR013111 : EGF-like domain, extracellular
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, mito 5, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0028854
HIT000325769
(
Y13359
)
(Non-protein coding transcript.)
genome : 175,375,845 - 175,712,906 (337,062)
query : 1 - 709 (709/709)
3 exons
identity = 0.992
3'(1.000;1.000;0.989)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028854)
HIX0161481
HIT000553381 (
ENST00000455447
)
(Hypothetical short protein.)
genome : 175,507,911 - 175,525,954 (18,044)
query : 1 - 630 (630/630)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161481)
HIX0001354
HIT000097609
(
BC043291
)
Representative transcript
(Hypothetical short protein.)
genome : 175,526,124 - 175,537,387 (11,264)
query : 8 - 1,934 (1,927/1,949)
2 exons
identity = 0.997
5'(0.994;0.998)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, cyto 13.5, nucl 11.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001354)
HIX0093863
HIT000018081
(
AK093214
)
Representative transcript
(Hypothetical protein.)
genome : 175,526,155 - 175,533,005 (6,851)
query : 1 - 1,914 (1,914/1,914)
2 exons
identity = 0.999
3'(0.993;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 9.83333, nucl 8.5, cyto 8,
cyto_pero 5, mito_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0093863)
HIX0214368
HIT000205142 (
NM_014857
)
(Rab GTPase-activating protein 1-like;)
genome : 174,128,552 - 174,927,327 (798,776)
query : 1 - 3,010 (3,010/3,022)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, pero 7, nucl 6.5, plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000020693
(
AK095838
)
(Rab GTPase-activating protein 1-like;)
genome : 174,128,655 - 174,927,319 (798,665)
query : 1 - 2,899 (2,899/2,930)
21 exons
identity = 0.999
5'(1.000;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.989
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR006020 : PTB/PI domain
IPR022164 : Kinesin-like
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0005515 : Molecular Function : protein binding
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, pero 7, nucl 6.5, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000106157 (
ENST00000251507
)
(Rab GTPase-activating protein 1-like;)
genome : 174,128,655 - 174,927,319 (798,665)
query : 1 - 2,899 (2,899/2,899)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, pero 7, nucl 6.5, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000487420
(
AB449904
)
Representative transcript
(Rab GTPase-activating protein 1-like;)
genome : 174,188,296 - 174,926,701 (738,406)
query : 1 - 2,446 (2,446/2,448)
19 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.944)3'
coverage = 0.999
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR006020 : PTB/PI domain
IPR022164 : Kinesin-like
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0005515 : Molecular Function : protein binding
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, pero 7, nucl 6.5, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720617
Mus
sp. (Mouse) : AK035796
Pongo
sp. (Orangutan) : CR858052
Oryzias
sp. (Medaka) : ENSORLT00000010895
Tetraodon
sp. (Tetraodon) : GSTENT00019267001
Macaca
sp. (Macaque) : XM_001104084
Monodelphis
sp. (Opossum) : XM_001373414
Equus
sp. (Horse) : XM_001497501
Rattus
sp. (Rat) : XM_222799
Pan
sp. (Chimpanzee) : XM_514012
Canis
sp. (Dog) : XM_537185
Danio
sp. (Zebrafish) : XM_677661
HIX0214368
HIT000331804
(
AY364260
)
(Rab GTPase-activating protein 1-like isoform A.)
genome : 174,241,562 - 174,927,116 (685,555)
query : 1 - 1,481 (1,481/1,481)
14 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.944;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR022164 : Kinesin-like
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.8333, nucl 8,
cyto_mito 7.66667, pero 4, plas 3, mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000124263 (
ENST00000325589
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,669,663 - 174,959,537 (289,875)
query : 1 - 1,871 (1,871/1,880)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, E.R. 11, plas 4, pero 1.5, cyto_pero 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000058593
(
AB019493
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,669,672 - 174,959,537 (289,866)
query : 1 - 1,862 (1,862/1,871)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, E.R. 11, plas 4, pero 1.5, cyto_pero 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000058590
(
AB019490
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,669,869 - 174,959,478 (289,610)
query : 1 - 2,103 (2,103/2,103)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000348966 (
ENST00000367686
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,669,869 - 174,959,478 (289,610)
query : 1 - 2,103 (2,103/2,103)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000574071 (
ENST00000469553
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,669,869 - 174,959,478 (289,610)
query : 1 - 2,103 (2,103/2,103)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 13, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000348967 (
ENST00000367687
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,670,158 - 174,959,730 (289,573)
query : 1 - 1,849 (1,849/1,849)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, cyto_nucl 10.8333, cyto_mito 9.33333, pero 5,
nucl 3.5, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000058591
(
AB019491
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,670,160 - 174,959,650 (289,491)
query : 1 - 1,749 (1,749/1,749)
11 exons
identity = 0.992
5'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.981)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.3333, cyto_mito 10.8333,
nucl 4.5, plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000307423 (
ENST00000347255
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,670,160 - 174,959,650 (289,491)
query : 1 - 1,744 (1,744/1,744)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.3333, cyto_mito 10.8333,
nucl 4.5, plas 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000058592
(
AB019492
)
(Rab GTPase-activating protein 1-like isoform A.)
genome : 174,671,261 - 174,959,761 (288,501)
query : 1 - 1,745 (1,745/1,745)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, E.R. 11, plas 4, pero 1.5, cyto_pero 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000723020 (
NM_001243765
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,769,035 - 174,964,445 (195,411)
query : 1 - 6,856 (6,856/6,874)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000000188
(
AB007940
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,769,070 - 174,964,444 (195,375)
query : 12 - 6,834 (6,823/6,834)
9 exons
identity = 0.998
5'(0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000593212 (
ENST00000489615
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,769,070 - 174,964,445 (195,376)
query : 1 - 6,821 (6,821/6,821)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000570112 (
ENST00000465412
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,843,609 - 174,952,037 (108,429)
query : 1 - 710 (710/710)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 16, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000306148
(
CR627374
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,846,578 - 174,964,439 (117,862)
query : 1 - 6,283 (6,283/6,353)
8 exons
identity = 0.999
5'(1.000;0.989;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000475558 (
ENST00000392064
)
(Rab GTPase-activating protein 1-like isoform B.)
genome : 174,846,578 - 174,964,438 (117,861)
query : 1 - 6,282 (6,282/6,282)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16, nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0214368
HIT000250048
(
AL035303
)
(Rab GTPase-activating protein 1-like isoform C.)
genome : 174,926,592 - 174,959,507 (32,916)
query : 1 - 1,187 (1,187/1,187)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214368)
HIX0001350
HIT000348961 (
ENST00000367681
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,968,300 - 174,980,851 (12,552)
query : 1 - 2,834 (2,834/2,834)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, nucl 7, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000316388 (
NM_001007214
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,968,571 - 174,981,163 (12,593)
query : 1 - 2,875 (2,875/2,875)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, nucl 7, extr 2, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000018292
(
AK093425
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,968,598 - 174,980,851 (12,254)
query : 2 - 2,528 (2,527/2,528)
6 exons
identity = 0.996
5'(1.000;0.991;1.000;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, nucl 7, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000348959 (
ENST00000367679
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,968,869 - 174,980,846 (11,978)
query : 1 - 2,766 (2,766/2,766)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000204789 (
NM_014412
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,968,892 - 174,981,163 (12,272)
query : 1 - 3,060 (3,060/3,060)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000032566
(
BC005975
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,091 - 174,979,934 (10,844)
query : 1 - 1,632 (1,632/1,664)
6 exons
identity = 0.998
5'(0.996;1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.998
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000578234 (
ENST00000473925
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,091 - 174,977,890 (8,800)
query : 1 - 804 (804/804)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 16.3333, cyto 12.5,
cyto_pero 7.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000432144
(
AK313278
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,101 - 174,979,215 (10,115)
query : 1 - 903 (903/903)
6 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000077106
(
AF314752
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,193 - 174,979,941 (10,749)
query : 1 - 1,537 (1,537/1,537)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000039493
(
BC022352
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,195 - 174,979,500 (10,306)
query : 1 - 1,095 (1,095/1,123)
6 exons
identity = 0.998
5'(0.986;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000250050
(
AL035305
)
Representative transcript
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,200 - 174,980,846 (11,647)
query : 1 - 2,435 (2,435/2,435)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169851
Mus
sp. (Mouse) : AK089043
Danio
sp. (Zebrafish) : BC066608
Rattus
sp. (Rat) : BC079007
Bos
sp. (Cow) : BC102091
Gallus
sp. (Chicken) : BX934623
Tetraodon
sp. (Tetraodon) : CR692188
Pongo
sp. (Orangutan) : CR860325
Oryzias
sp. (Medaka) : ENSORLT00000020323
Takifugu
sp. (Fugu) : SINFRUT00000161258
Monodelphis
sp. (Opossum) : XM_001365424
Equus
sp. (Horse) : XM_001493405
Pan
sp. (Chimpanzee) : XM_514016
Canis
sp. (Dog) : XM_537183
HIX0001350
HIT000064759
(
AF057356
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,203 - 174,979,519 (10,317)
query : 1 - 1,105 (1,105/1,105)
6 exons
identity = 0.999
5'(0.992;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000262791
(
BC067823
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,212 - 174,979,939 (10,728)
query : 3 - 1,518 (1,516/1,533)
6 exons
identity = 0.999
5'(0.992;1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000265710
(
BC078151
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,227 - 174,979,937 (10,711)
query : 1 - 1,499 (1,499/1,513)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000075935
(
AF275803
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,969,258 - 174,979,415 (10,158)
query : 1 - 945 (945/1,000)
6 exons
identity = 0.988
5'(0.986;0.995;1.000;1.000;0.990;0.978)3'
coverage = 0.999
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000505198 (
ENST00000405362
)
(Calcyclin-binding protein isoform 2.)
genome : 174,969,349 - 174,979,215 (9,867)
query : 1 - 1,059 (1,059/1,059)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, nucl 7, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000254514
(
AY423723
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,973,737 - 174,979,245 (5,509)
query : 3 - 718 (716/718)
5 exons
identity = 0.993
5'(0.979;1.000;1.000;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR007052 : CS domain
IPR007699 : SGS
IPR008978 : HSP20-like chaperone
IPR015120 : Siah interacting protein, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.3333, cyto 11,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
HIX0001350
HIT000505713 (
ENST00000406752
)
(Calcyclin-binding protein; CacyBP; hCacyBP; S100A6-binding protein; Siah-interacting protein;)
genome : 174,973,737 - 174,975,907 (2,171)
query : 2 - 243 (242/243)
2 exons
identity = 0.979
5'(0.977;1.000)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 14, extr 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001350)
AL022400.8
174200001-174338184 F +
NCBI
AL022171.1
174338185-174434958 F +
NCBI
AL031278.1
174434959-174469380 F +
NCBI
AL021069.1
174469381-174569776 F -
NCBI
AL591108.18
174569777-174645536 F +
NCBI
AL136377.15
174645537-174723746 F +
NCBI
AL161671.25
174723747-174822095 F +
NCBI
AL008735.2
174822096-174860660 F +
NCBI
Z99127.2
174860661-174983081 F +
NCBI
Z99297.1
174983082-175083975 F -
NCBI
Z99715.1
175083976-175135957 F -
NCBI
AL008626.1
175135958-175266479 F -
NCBI
Z94057.1
175266480-175346503 F -
NCBI
Z94055.1
175346504-175480937 F -
NCBI
AL021919.4
175480938-175619473 F +
NCBI
AL136530.13
175619474-175632432 F +
NCBI
AL023285.1
175632433-175739684 F +
NCBI
AL139411.11
175739685-175800000 F +
NCBI